pfastDNAml: Using Parallel Computing for Maximum Likelihood Phylogenetic Analysis. - Heiko A. Schmidt; Martin Vingron (German Conference on Bioinformatics, 1998)

Axeldb: a Xenopus laevis database focusing on gene expression. - Nicolas Pollet; Heiko A. Schmidt; Volker Gawantka; Martin Vingron; Christof Niehrs (Nucleic Acids Res., 2000)

TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. - Heiko A. Schmidt; Korbinian Strimmer; Martin Vingron; Arndt von Haeseler (Bioinform., 2002)

Molecular phylogenetics: parallelized parameter estimation and quartet puzzling. - Heiko A. Schmidt; Ekkehard Petzold; Martin Vingron; Arndt von Haeseler (J. Parallel Distributed Comput., 2003)

Phylogenetic trees from large datasets. - Heiko A. Schmidt (2003)

PhyNav: A Novel Approach to Reconstruct Large Phylogenies. - Le Sy Vinh; Heiko A. Schmidt; Arndt von Haeseler (GfKl, 2004)

pIQPNNI: parallel reconstruction of large maximum likelihood phylogenies. - Bui Quang Minh; Le Sy Vinh; Arndt von Haeseler; Heiko A. Schmidt (Bioinform., 2005)

pIPHULA - parallel inference of population parameters using a likelihood approach. - Heiko A. Schmidt; Arndt von Haeseler; Jutta Buschbom (Bioinform., 2007)

Accuracy of phylogeny reconstruction methods combining overlapping gene data sets. - Anne Kupczok; Heiko A. Schmidt; Arndt von Haeseler (Algorithms Mol. Biol., 2010)

DAGwoman: enabling DAGMan-like workflows on non-Condor platforms. - Thomas Tschager; Heiko A. Schmidt (SWEET@SIGMOD, 2012)