GenePicker: replicate analysis of Affymetrix gene expression microarrays. - Giacomo Finocchiaro; Paola Parise; Simone P. Minardi; Myriam Alcalay; Heiko Müller 003 (Bioinform., 2004)

Mining published lists of cancer related microarray experiments: Identification of a gene expression signature having a critical role in cell-cycle control. - Giacomo Finocchiaro; Francesco Mancuso; Heiko Müller 003 (BMC Bioinform., 2005)

SMITH: a LIMS for handling next-generation sequencing workflows. - Francesco Venco; Yuriy Vaskin; Arnaud Céol; Heiko Müller 003 (BMC Bioinform., 2014)

AnnotateGenomicRegions: a web application. - Luca Zammataro; Rita DeMolfetta; Gabriele Bucci; Arnaud Céol; Heiko Müller 003 (BMC Bioinform., 2014)

The MI bundle: enabling network and structural biology in genome visualization tools. - Arnaud Céol; Heiko Müller 003 (Bioinform., 2015)

GenoMetric Query Language: a novel approach to large-scale genomic data management. - Marco Masseroli; Pietro Pinoli; Francesco Venco; Abdulrahman Kaitoua; Vahid Jalili; Fernando Palluzzi; Heiko Müller 003; Stefano Ceri (Bioinform., 2015)

Genome and network visualization facilitates the analyses of the effects of drugs and mutations on protein-protein and drug-protein networks. - Arnaud Céol; Lisette G. G. C. Verhoef; Mark Wade; Heiko Müller 003 (BMC Bioinform., 2016)

LowMACA: exploiting protein family analysis for the identification of rare driver mutations in cancer. - Giorgio E. M. Melloni; Stefano de Pretis; Laura Riva; Mattia Pelizzola; Arnaud Céol; Jole Costanza; Heiko Müller 003; Luca Zammataro (BMC Bioinform., 2016)

VCF.Filter: interactive prioritization of disease-linked genetic variants from sequencing data. - Heiko Müller 003; Raúl Jiménez-Heredia; Ana Krolo; Tatjana Hirschmugl; Jasmin Dmytrus; Kaan Boztug; Christoph Bock (Nucleic Acids Res., 2017)