APOPTO-CELL - a simulation tool and interactive database for analyzing cellular susceptibility to apoptosis. - Heinrich J. Huber; Markus Rehm 001; Martin Plchút; Heiko Düssmann; Jochen H. M. Prehn (Bioinform., 2007)

Automatic quality assessment for fluorescence microscopy images. - Perrine Paul; Dimitrios Kalamatianos; Heiko Duessmann; Heinrich J. Huber (BIBE, 2008)

www.rnaworkbench.com: A new program for analyzing RNA interference. - Radka Svobodová Vareková; Ivan Bradác; Martin Plchút; Michal Skrdla; Michael Wacenovsky; Helmuth Mahr; Georg Mayer; Herbert Tanner; Hermann Brugger; Josef Withalm; Peter Lederer; Heinrich J. Huber; et al. (Comput. Methods Programs Biomed., 2008)

Diffusion is capable of translating anisotropic apoptosis initiation into a homogeneous execution of cell death. - Heinrich J. Huber; Maike A. Laussmann; Jochen H. M. Prehn; Markus Rehm 001 (BMC Syst. Biol., 2010)

Automatic noise quantification for confocal fluorescence microscopy images. - Perrine Paul; Heiko Duessmann; Tytus Bernas; Heinrich J. Huber; Dimitrios Kalamatianos (Comput. Medical Imaging Graph., 2010)

Predicting pKa Values of Substituted Phenols from Atomic Charges: Comparison of Different Quantum Mechanical Methods and Charge Distribution Schemes. - Radka Svobodová Vareková; Stanislav Geidl; Crina-Maria Ionescu; Ondrej Skrehota; Michal Kudera; David Sehnal; Tomás Bouchal; Ruben Abagyan; Heinrich J. Huber; Jaroslav Koca (J. Chem. Inf. Model., 2011)

SiteBinder - an improved approach for comparing multiple protein structural motifs. Case studies on biologically important motifs. - David Sehnal; Radka Svobodová Vareková; Heinrich J. Huber; Stanislav Geidl; Crina-Maria Ionescu; Michaela Wimmerová; Jaroslav Koca (J. Cheminformatics, 2012)

SiteBinder: An Improved Approach for Comparing Multiple Protein Structural Motifs. - David Sehnal; Radka Svobodová Vareková; Heinrich J. Huber; Stanislav Geidl; Crina-Maria Ionescu; Michaela Wimmerová; Jaroslav Koca (J. Chem. Inf. Model., 2012)

Charge Profile Analysis Reveals That Activation of Pro-apoptotic Regulators Bax and Bak Relies on Charge Transfer Mediated Allosteric Regulation. - Crina-Maria Ionescu; Radka Svobodová Vareková; Jochen H. M. Prehn; Heinrich J. Huber; Jaroslav Koca (PLoS Comput. Biol., 2012)

Stable IL-$1 beta$1β-Activation in an Inflammasome Signalling Model Depends on Positive and Negative Feedbacks and Tight Regulation of Protein Production. - Fernando Lopez-Caamal; Heinrich J. Huber (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)