KINSOLVER: A simulator for computing large ensembles of biochemical and gene regulatory networks. - Boanerges Aleman-Meza; Yihai Yu; Heinz-Bernd Schüttler; Jonathan P. Arnold; Thiab R. Taha (Comput. Math. Appl., 2009)

Solving Large Nonlinear Systems of First-Order Ordinary Differential Equations With Hierarchical Structure Using Multi-GPGPUs and an Adaptive Runge Kutta ODE Solver. - Ahmad Al-Omari; Jonathan P. Arnold; Thiab R. Taha; Heinz-Bernd Schüttler (IEEE Access, 2013)

Solving Nonlinear Systems of First Order Ordinary Differential Equations Using a Galerkin Finite Element Method. - Ahmad Al-Omari; Heinz-Bernd Schüttler; Jonathan P. Arnold; Thiab R. Taha (IEEE Access, 2013)

Discovering Regulatory Network Topologies Using Ensemble Methods on GPGPUs With Special Reference to the Biological Clock of Neurospora crassa. - Ahmad Al-Omari; James Griffith; Michael T. Judge; Thiab R. Taha; Jonathan P. Arnold; Heinz-Bernd Schüttler (IEEE Access, 2015)

Discovering Regulators in Post-Transcriptional Control of the Biological Clock of $Neurospora crassa$ Using Variable Topology Ensemble Methods on GPUs. - Ahmad Al-Omari; James Griffith; Cristian Caranica; Thiab R. Taha; Heinz-Bernd Schüttler; Jonathan P. Arnold (IEEE Access, 2018)

Single Cells of Neurospora Crassa Show Circadian Oscillations, Light Entrainment, Temperature Compensation, and Phase Synchronization. - Zhaojie Deng; Jia Hwei-Cheong; Cristian Caranica; Lingyun Wu; Xiao Qiu; Michael T. Judge; Brooke Hull; Carmen Rodriguez; James Griffith; Ahmad Al-Omari; Sam Arsenault; Heinz-Bernd Schüttler; et al. (IEEE Access, 2019)

Single cells of Neurospora crassa show circadian oscillations, light entrainment, temperature compensation, and phase synchronization. - Zhaojie Deng; Jia Hwei-Cheong; Cristian Caranica; Lingyun Wu; Michael T. Judge; Brooke Hull; Carmen Rodriguez; James Griffith; Ahmad Al-Omari; Sam Arsenault; Heinz-Bernd Schüttler; Leidong Mao; et al. (IEEE DataPort, 2019)

Ensemble Methods for Identifying RNA Operons and Regulons in the Clock Network of Neurospora Crassa. - Ahmad Al-Omari; James Griffith; Ashley Scruse; Robert W. Robinson; Heinz-Bernd Schüttler; Jonathan P. Arnold (IEEE Access, 2022)

MINE: a new way to design genetics experiments for discovery. - Isaac Torres; Shufan Zhang; Amanda Bouffier; Michael Skaro; Yue Wu; Lauren Stupp; Jonathan P. Arnold; Y. Anny Chung; Heinz-Bernd Schüttler (Briefings Bioinform., 2024)