Syntactic recognition of regulatory regions in Escherichia coli. - David A. Rosenblueth; Denis Thieffry; Araceli M. Huerta; Heladia Salgado; Julio Collado-Vides (Comput. Appl. Biosci., 1996)

Prediction of transcriptional regulatory sites in the complete genome sequence of Escherichia coli K-12. - Denis Thieffry; Heladia Salgado; Araceli M. Huerta; Julio Collado-Vides (Bioinform., 1998)

RegulonDB: a database on transcriptional regulation in Escherichia coli. - Araceli M. Huerta; Heladia Salgado; Denis Thieffry; Julio Collado-Vides (Nucleic Acids Res., 1998)

RegulonDB (version 2.0): a database on transcriptional regulation in Escherichia coli. - Heladia Salgado; Alberto Santos-Zavaleta; Ulises Garza-Ramos; Jacques van Helden; Edgar Díaz-Peredo; Julio Collado-Vides (Nucleic Acids Res., 1999)

RegulonDB (version 3.0): transcriptional regulation and operon organization in Escherichia coli K-12. - Heladia Salgado; Alberto Santos-Zavaleta; Socorro Gama-Castro; Dulce Millán-Zárate; Frederick R. Blattner; Julio Collado-Vides (Nucleic Acids Res., 2000)

RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12. - Heladia Salgado; Alberto Santos-Zavaleta; Socorro Gama-Castro; Dulce Millán-Zárate; Edgar Díaz-Peredo; Fabiola Sánchez-Solano; Ernesto Pérez-Rueda; César Bonavides-Martínez; Julio Collado-Vides (Nucleic Acids Res., 2001)

Genomics of Gene Regulation: The View from Escherichia coli. - Julio Collado-Vides; Gabriel Moreno-Hagelsieb; Ernesto Pérez-Rueda; Heladia Salgado; Araceli M. Huerta; Rosa María Gutiérrez; David A. Rosenblueth; Andrés Christen; Esperanza Benítez-Bellón; Arturo Medrano-Soto; Socorro Gama-Castro; Alberto Santos-Zavaleta; et al. (Gene Regulations and Metabolism, 2002)

RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12. - Heladia Salgado; Socorro Gama-Castro; Agustino Martínez-Antonio; Edgar Díaz-Peredo; Fabiola Sánchez-Solano; Martín Peralta-Gil; Delfino Garcia-Alonso; Verónica Jiménez-Jacinto; Alberto Santos-Zavaleta; César Bonavides-Martínez; Julio Collado-Vides (Nucleic Acids Res., 2004)

The comprehensive updated regulatory network of Escherichia coli K-12. - Heladia Salgado; Alberto Santos-Zavaleta; Socorro Gama-Castro; Martín Peralta-Gil; Mónica I. Peñaloza-Spínola; Agustino Martínez-Antonio; Peter D. Karp; Julio Collado-Vides (BMC Bioinform., 2006)

RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions. - Heladia Salgado; Socorro Gama-Castro; Martín Peralta-Gil; Edgar Díaz-Peredo; Fabiola Sánchez-Solano; Alberto Santos-Zavaleta; Irma Martínez-Flores; Verónica Jiménez-Jacinto; César Bonavides-Martínez; Juan Segura-Salazar; Agustino Martínez-Antonio; Julio Collado-Vides (Nucleic Acids Res., 2006)

NLP-Based Curation of Bacterial Regulatory Networks. - Carlos Rodríguez Penagos; Heladia Salgado; Irma Martínez-Flores; Julio Collado-Vides (CICLing, 2007)

Automatic reconstruction of a bacterial regulatory network using Natural Language Processing. - Carlos Rodríguez Penagos; Heladia Salgado; Irma Martínez-Flores; Julio Collado-Vides (BMC Bioinform., 2007)

RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation. - Socorro Gama-Castro; Verónica Jiménez-Jacinto; Martín Peralta-Gil; Alberto Santos-Zavaleta; Mónica I. Peñaloza-Spínola; Bruno Contreras-Moreira; Juan Segura-Salazar; Luis Muñiz-Rascado; Irma Martínez-Flores; Heladia Salgado; César Bonavides-Martínez; Cei Abreu-Goodger; et al. (Nucleic Acids Res., 2008)

RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units). - Socorro Gama-Castro; Heladia Salgado; Martín Peralta-Gil; Alberto Santos-Zavaleta; Luis Muñiz-Rascado; Hilda Solano-Lira; Verónica Jiménez-Jacinto; Verena Weiss; Jair S. García-Sotelo; Alejandra López-Fuentes; Liliana Porrón-Sotelo; Shirley Alquicira-Hernández; et al. (Nucleic Acids Res., 2011)

Evidence classification of high-throughput protocols and confidence integration in RegulonDB. - Verena Weiss; Alejandra Medina-Rivera; Araceli M. Huerta; Alberto Santos-Zavaleta; Heladia Salgado; Enrique Morett; Julio Collado-Vides (Database J. Biol. Databases Curation, 2013)

RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. - Heladia Salgado; Martín Peralta-Gil; Socorro Gama-Castro; Alberto Santos-Zavaleta; Luis Muñiz-Rascado; Jair S. García-Sotelo; Verena Weiss; Hilda Solano-Lira; Irma Martínez-Flores; Alejandra Medina-Rivera; Gerardo Salgado-Osorio; Shirley Alquicira-Hernández; et al. (Nucleic Acids Res., 2013)

RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond. - Socorro Gama-Castro; Heladia Salgado; Alberto Santos-Zavaleta; Daniela Ledezma-Tejeida; Luis Muñiz-Rascado; Jair Santiago García-Sotelo; Kevin Alquicira-Hernández; Irma Martínez-Flores; Lucia Pannier; Jaime Abraham Castro-Mondragón; Alejandra Medina-Rivera; Hilda Solano-Lira; et al. (Nucleic Acids Res., 2016)

MCO: towards an ontology and unified vocabulary for a framework-based annotation of microbial growth conditions. - Víctor H. Tierrafría; Citlalli Mejía-Almonte; J. M. Camacho-Zaragoza; Heladia Salgado; K. Alquicira; Chu Ishida; Socorro Gama-Castro; Julio Collado-Vides (Bioinform., 2019)

RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12. - Alberto Santos-Zavaleta; Heladia Salgado; Socorro Gama-Castro; Mishael Sánchez-Pérez; Laura Gómez-Romero; Daniela Ledezma-Tejeida; Jair Santiago García-Sotelo; Kevin Alquicira-Hernández; Luis Muñiz-Rascado; Pablo Peña-Loredo; Cecilia Ishida-Gutiérrez; David A. Velázquez-Ramírez; et al. (Nucleic Acids Res., 2019)

Programmatic access to bacterial regulatory networks with regutools. - Joselyn Chávez; Carmina Barberena-Jonas; Jesus E. Sotelo-Fonseca; José Alquicira-Hernández; Heladia Salgado; Leonardo Collado-Torres; Alejandro Reyes (Bioinform., 2020)