Machine Learning for Predicting Vaccine Immunogenicity. - Eva K. Lee; Helder I. Nakaya; Fan Yuan; Troy D. Querec; Greg Burel; Ferdinand H. Pietz; Bernard A. Benecke; Bali Pulendran (Interfaces, 2016)

StructRNAfinder: an automated pipeline and web server for RNA families prediction. - Raúl Arias-Carrasco; Yessenia Vásquez-Morán; Helder I. Nakaya; Vinicius Maracaja-Coutinho (BMC Bioinform., 2018)

CEMiTool: a Bioconductor package for performing comprehensive modular co-expression analyses. - Pedro S. T. Russo; Gustavo R. Ferreira; Lucas E. Cardozo; Matheus C. Bürger; Raúl Arias-Carrasco; Sandra R. Maruyama; Thiago D. C. Hirata; Diógenes S. Lima; Fernando M. Passos; Kiyoshi F. Fukutani; Melissa Lever; João S. Silva; et al. (BMC Bioinform., 2018)

OUTBREAK: A user-friendly georeferencing online tool for disease surveillance. - Raúl Arias-Carrasco; Jeevan Giddaluru; Lucas E. Cardozo; Felipe Martins; Vinicius Maracaja-Coutinho; Helder I. Nakaya (CoRR, 2020)

Editorial: Big Data and machine learning in cancer theranostics. - Fabrício Alves Barbosa da Silva; Jack Adam Tuszynski; Helder I. Nakaya; Channing J. Paller (Frontiers Big Data, 2022)

Ten quick tips for harnessing the power of ChatGPT in computational biology. - Tiago Lubiana; Rafael Lopes; Pedro Medeiros; Juan Carlo Silva; Andre Nicolau Aquime Goncalves; Vinicius Maracaja-Coutinho; Helder I. Nakaya (PLoS Comput. Biol., 2023)