The structure of drug-deoxydinucleoside phosphate complex; generalized conformational behavior of intercalation complexes with RNA and DNA fragments. - H. S. Shieh; Helen M. Berman; M. Dabrow; Stephen Neidle (Nucleic Acids Res., 1980)

The Protein Data Bank. - Helen M. Berman; John D. Westbrook; Zukang Feng; Gary Gilliland; T. N. Bhat; Helge Weissig; Ilya N. Shindyalov; Philip E. Bourne (Nucleic Acids Res., 2000)

The PDB data uniformity project. - T. N. Bhat; Philip E. Bourne; Zukang Feng; Gary Gilliland; Shri Jain; Veerasamy Ravichandran; Bohdan Schneider; Kata Schneider; Narmada Thanki; Helge Weissig; John D. Westbrook; Helen M. Berman (Nucleic Acids Res., 2001)

The Protein Data Bank: unifying the archive. - John D. Westbrook; Zukang Feng; Shri Jain; T. N. Bhat; Narmada Thanki; Veerasamy Ravichandran; Gary Gilliland; Wolfgang Bluhm; Helge Weissig; Douglas S. Greer; Philip E. Bourne; Helen M. Berman (Nucleic Acids Res., 2002)

The Protein Data Bank and structural genomics. - John D. Westbrook; Zukang Feng; Li Chen 022; Huanwang Yang; Helen M. Berman (Nucleic Acids Res., 2003)

Tools for the automatic identification and classification of RNA base pairs. - Huanwang Yang; Fabrice Jossinet; Neocles Leontis; Li Chen 022; John D. Westbrook; Helen M. Berman; Eric Westhof (Nucleic Acids Res., 2003)

The Need for Dictionaries, Ontologies, and Controlled Vocabularies. - Helen M. Berman; John D. Westbrook (OMICS, 2003)

The Protein Data Bank and lessons in data management. - Philip E. Bourne; John D. Westbrook; Helen M. Berman (Briefings Bioinform., 2004)

TargetDB: a target registration database for structural genomics projects. - Li Chen 022; Rose Oughtred; Helen M. Berman; John D. Westbrook (Bioinform., 2004)

Ligand Depot: a data warehouse for ligands bound to macromolecules. - Zukang Feng; Li Chen 022; Himabindu Maddula; Ozgur Akcan; Rose Oughtred; Helen M. Berman; John D. Westbrook (Bioinform., 2004)

The distribution and query systems of the RCSB Protein Data Bank. - Philip E. Bourne; Kenneth J. Addess; Wolfgang Bluhm; Li Chen 022; Nita Deshpande; Zukang Feng; Ward Fleri; Rachel Kramer Green; Jeffrey C. Merino-Ott; Wayne Townsend-Merino; Helge Weissig; John D. Westbrook; et al. (Nucleic Acids Res., 2004)

PDBML: the representation of archival macromolecular structure data in XML. - John D. Westbrook; Nobutoshi Ito; Haruki Nakamura; Kim Henrick; Helen M. Berman (Bioinform., 2005)

The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema. - Nita Deshpande; Kenneth J. Addess; Wolfgang Bluhm; Jeffrey C. Merino-Ott; Wayne Townsend-Merino; Qing Zhang; Charlie Knezevich; Lie Xie; Li Chen 022; Zukang Feng; Rachel Kramer Green; Judith L. Flippen-Anderson; et al. (Nucleic Acids Res., 2005)

The RCSB PDB information portal for structural genomics. - Andrei Kouranov; Lei Xie 006; Joanna de la Cruz; Li Chen 022; John D. Westbrook; Philip E. Bourne; Helen M. Berman (Nucleic Acids Res., 2006)

The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data. - Helen M. Berman; Kim Henrick; Haruki Nakamura; John L. Markley (Nucleic Acids Res., 2007)

Remediation of the protein data bank archive. - Kim Henrick; Zukang Feng; Wolfgang Bluhm; Dimitris Dimitropoulos; Jurgen F. Doreleijers; Shuchismita Dutta; Judith L. Flippen-Anderson; John M. C. Ionides; Chisa Kamada; Eugene Krissinel; Catherine L. Lawson; John L. Markley; et al. (Nucleic Acids Res., 2008)

The protein structure initiative structural genomics knowledgebase. - Helen M. Berman; John D. Westbrook; Margaret J. Gabanyi; Wendy Tao; Raship Shah; Andrei Kouranov; Torsten Schwede; Konstantin Arnold; Florian Kiefer; Lorenza Bordoli; Jürgen Kopp; Michael Podvinec; et al. (Nucleic Acids Res., 2009)

Workshop Introduction. - Steven J. Ludtke; Catherine L. Lawson; Gerard J. Kleywegt; Helen M. Berman; Wah Chiu (Pacific Symposium on Biocomputing, 2011)

Quality assurance for the query and distribution systems of the RCSB Protein Data Bank. - Wolfgang Bluhm; Bojan Beran; Chunxiao Bi; Dimitris Dimitropoulos; Andreas Prlic; Greg B. Quinn; Peter W. Rose; Chaitali Shah; Jasmine Young; Benjamin T. Yukich; Helen M. Berman; Philip E. Bourne (Database J. Biol. Databases Curation, 2011)

EMDataBank.org: unified data resource for CryoEM. - Catherine L. Lawson; Matthew L. Baker; Christoph Best; Chunxiao Bi; Matthew T. Dougherty; Powei Feng; Glen van Ginkel; Batsal Devkota; Ingvar C. Lagerstedt; Steven J. Ludtke; Richard H. Newman; Thomas J. Oldfield; et al. (Nucleic Acids Res., 2011)

The RCSB Protein Data Bank: redesigned web site and web services. - Peter W. Rose; Bojan Beran; Chunxiao Bi; Wolfgang Bluhm; Dimitris Dimitropoulos; David S. Goodsell; Andreas Prlic; Martha Quesada; Greg B. Quinn; John D. Westbrook; Jasmine Young; Benjamin T. Yukich; et al. (Nucleic Acids Res., 2011)

Chemical annotation of small and peptide-like molecules at the Protein Data Bank. - Jasmine Young; Zukang Feng; Dimitris Dimitropoulos; Raul Sala; John D. Westbrook; Marina Zhuravleva; Chenghua Shao; Martha Quesada; Ezra Peisach; Helen M. Berman (Database J. Biol. Databases Curation, 2013)

The RCSB Protein Data Bank: new resources for research and education. - Peter W. Rose; Chunxiao Bi; Wolfgang Bluhm; Cole H. Christie; Dimitris Dimitropoulos; Shuchismita Dutta; Rachel Kramer Green; David S. Goodsell; Andreas Prlic; Martha Quesada; Greg B. Quinn; Alexander G. Ramos; et al. (Nucleic Acids Res., 2013)

The Protein Data Bank archive as an open data resource. - Helen M. Berman; Gerard J. Kleywegt; Haruki Nakamura; John L. Markley (J. Comput. Aided Mol. Des., 2014)

The Nucleic Acid Database: new features and capabilities. - Buvaneswari Coimbatore Narayanan; John D. Westbrook; Saheli Ghosh; Anton I. Petrov; Blake A. Sweeney; Craig L. Zirbel; Neocles Leontis; Helen M. Berman (Nucleic Acids Res., 2014)

RCSB PDB Mobile: iOS and Android mobile apps to provide data access and visualization to the RCSB Protein Data Bank. - Gregory B. Quinn; Chunxiao Bi; Cole H. Christie; Kyle Pang; Andreas Prlic; Takanori Nakane; Christine Zardecki; Maria Voigt; Helen M. Berman; Philip E. Bourne; Peter W. Rose (Bioinform., 2015)

The RCSB Protein Data Bank: views of structural biology for basic and applied research and education. - Peter W. Rose; Andreas Prlic; Chunxiao Bi; Wolfgang Bluhm; Cole H. Christie; Shuchismita Dutta; Rachel Kramer Green; David S. Goodsell; John D. Westbrook; Jesse Woo; Jasmine Young; Christine Zardecki; et al. (Nucleic Acids Res., 2015)

EMDataBank unified data resource for 3DEM. - Catherine L. Lawson; Ardan Patwardhan; Matthew L. Baker; Corey Hryc; Eduardo Sanz-García; Brian P. Hudson; Ingvar C. Lagerstedt; Steven J. Ludtke; Grigore Pintilie; Raul Sala; John D. Westbrook; Helen M. Berman; et al. (Nucleic Acids Res., 2016)

The RCSB protein data bank: integrative view of protein, gene and 3D structural information. - Peter W. Rose; Andreas Prlic; Ali Altunkaya; Chunxiao Bi; Anthony R. Bradley; Cole H. Christie; Luigi Di Costanzo; Jose M. Duarte; Shuchismita Dutta; Zukang Feng; Rachel Kramer Green; David S. Goodsell; et al. (Nucleic Acids Res., 2017)

DNAproDB: an interactive tool for structural analysis of DNA-protein complexes. - Jared M. Sagendorf; Helen M. Berman; Remo Rohs (Nucleic Acids Res., 2017)

Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data. - Jasmine Young; John D. Westbrook; Zukang Feng; Ezra Peisach; Irina Persikova; Raul Sala; Sanchayita Sen; John M. Berrisford; Jawahar Swaminathan; Thomas J. Oldfield; Aleksandras Gutmanas; Reiko Igarashi; et al. (Database J. Biol. Databases Curation, 2018)

Open access to research artifacts: Implementing the next generation data management plan. - Victoria Stodden; Vicki Ferrini; Margaret J. Gabanyi; Kerstin A. Lehnert; John Morton; Helen M. Berman (ASIST, 2019)

RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy. - Stephen K. Burley; Helen M. Berman; Charmi Bhikadiya; Chunxiao Bi; Li Chen 022; Luigi Di Costanzo; Cole H. Christie; Kenneth Dalenberg; Jose M. Duarte; Shuchismita Dutta; Zukang Feng; Sutapa Ghosh; et al. (Nucleic Acids Res., 2019)

DNAproDB: an expanded database and web-based tool for structural analysis of DNA?protein complexes. - Jared M. Sagendorf; Nicholas Markarian; Helen M. Berman; Remo Rohs (Nucleic Acids Res., 2020)

Database Evolution, by Scientists, for Scientists: A Case Study. - Robert E. Schuler; Jitin Singla; Brinda Vallat; Kate L. White; Helen M. Berman; Carl Kesselman (e-Science, 2023)