Within-host evolution of CD8+-TL epitopes encoded by overlapping and non-overlapping reading frames of simian immunodeficiency virus. - Austin L. Hughes; Helen Piontkivska; Kendall C. Krebs; David H. O'Connor; David I. Watkins (Bioinform., 2005)

Exploratory Tools for FollowUp Studies to Microarray Experiments. - Kaushik Sinha; Ruoming Jin; Gagan Agrawal; Helen Piontkivska (BIBE, 2006)

SNPMiner: A Domain-Specific Deep Web Mining Tool. - Fan Wang 004; Gagan Agrawal; Ruoming Jin; Helen Piontkivska (BIBE, 2007)

Graph and Topological Structure Mining on Scientific Articles. - Fan Wang 004; Ruoming Jin; Gagan Agrawal; Helen Piontkivska (BIBE, 2007)

Highly conserved and associated HIV-1 CTL and T-Helper epitopes in global HIV-1 population: potential candidates for multi-epitope HIV-1 vaccine. - Sinu Paul; Helen Piontkivska (BCB, 2010)

Role of ADAR in determining the substitution pattern in sigma virus (Rhabdoviridae) in Drosophila melanogaster. - Helen Piontkivska; Sinu Paul; Brian Scharfenberg; Marta Wayne; Luis F. Matos; William G. Farmerie; Michael M. Miyamoto (ICCABS, 2014)

Coevolutionary Patterns in HIV-1 Pre-integration Complex Offer Insights into Protein Structural Constraints. - Madara Hetti Arachchilage; Helen Piontkivska (BCB, 2018)

Matchmaking in Bioinformatics. - Ewy A. Mathé; Ben Busby; Helen Piontkivska; Team of Developers (F1000Research, 2018)

Automated Isoform Diversity Detector (AIDD): a pipeline for investigating transcriptome diversity of RNA-seq data. - Noel-Marie Plonski; Emily Johnson; Madeline Frederick; Heather Mercer; Gail Fraizer; Richard Meindl; Gemma Casadesus; Helen Piontkivska (BMC Bioinform., 2020)

Machine Learning Maps Research Needs in COVID-19 Literature. - Anhvinh Doanvo; Xiaolu Qian; Divya Ramjee; Helen Piontkivska; Angel Desai; Maimuna S. Majumder (Patterns, 2020)