Analyzing Th17 cell differentiation dynamics using a novel integrative modeling framework for time-course RNA sequencing data. - Jukka Intosalmi; Helena Ahlfors; Sini Rautio; Henrik Mannerström; Zhi Jane Chen; Riitta Lahesmaa; Brigitta Stockinger; Harri Lähdesmäki (BMC Syst. Biol., 2015)

Data-driven mechanistic analysis method to reveal dynamically evolving regulatory networks. - Jukka Intosalmi; Kari Nousiainen; Helena Ahlfors; Harri Lähdesmäki (Bioinform., 2016)

PairGP: Gaussian process modeling of longitudinal data from paired multi-condition studies. - Michele Vantini; Henrik Mannerström; Sini Rautio; Helena Ahlfors; Brigitta Stockinger; Harri Lähdesmäki (Comput. Biol. Medicine, 2022)