CRDOCK: An Ultrafast Multipurpose Protein-Ligand Docking Tool. - Álvaro Cortés Cabrera; Javier Klett; Helena G. Dos Santos; Almudena Perona; Rubén Gil-Redondo; Sandrea M. Francis; Eva-Maria Priego; Federico Gago; Antonio Morreale (J. Chem. Inf. Model., 2012)

Protein evolution along phylogenetic histories under structurally constrained substitution models. - Miguel Arenas; Helena G. Dos Santos; David Posada; Ugo Bastolla (Bioinform., 2013)

Predicted dynamical couplings of protein residues characterize catalysis, transport and allostery. - Alvaro Alfayate; Carlos Rodriguez Caceres; Helena G. Dos Santos; Ugo Bastolla (Bioinform., 2019)