Influence of sample variance on the phylogenetic reconstruction of protein sequences. - Helena Skutkova; Ivo Provazník; René Kizek (ISABEL, 2011)

Detection of short exons in DNA sequences using complex wavelet transform of structural features. - Ivo Provazník; Vladimira Kubicova; Helena Skutkova; Jiri Nedved; Ewaryst Tkacz; Petr Babula; René Kizek (GENSiPS, 2012)

Classification of genomic signals using dynamic time warping. - Helena Skutkova; Martin Vítek; Petr Babula; René Kizek; Ivo Provazník (BMC Bioinform., 2013)

Bipartite graphs for metagenomic data analysis and visualization. - Karel Sedlár; Helena Skutkova; Petra Videnska; Ivan Rychlik; Ivo Provazník (BIBM, 2015)

Set of rules for genomic signal downsampling. - Karel Sedlár; Helena Skutkova; Martin Vítek; Ivo Provazník (Comput. Biol. Medicine, 2016)

Overlap Detection for a Genome Assembly Based on Genomic Signal Processing. - Robin Jugas; Karel Sedlár; Martin Vítek; Helena Skutkova (CBMS, 2017)

The identification of replication origin in bacterial genomes by cumulated phase signal. - Denisa Maderankova; Karel Sedlár; Martin Vítek; Helena Skutkova (CIBCB, 2017)

Bioinformatic Tools for Genotyping of Klebsiella pneumoniae Isolates. - Marketa Nykrynova; Denisa Maderankova; Matej Bezdicek; Martina Lengerova; Helena Skutkova (ITIB, 2018)

Cross-correlation based detection of contigs overlaps. - Robin Jugas; Martin Vítek; Karel Sedlár; Helena Skutkova (MIPRO, 2018)

Clustering of Klebsiella Strains Based on Variability in Sequencing Data. - Vojtech Barton; Marketa Nykrynova; Matej Bezdicek; Martina Lengerova; Helena Skutkova (IWBBIO (2), 2019)

Signal Processing Based CNV Detection in Bacterial Genomes. - Robin Jugas; Martin Vítek; Denisa Maderankova; Helena Skutkova (IWBBIO (1), 2019)

Entropy-Based Detection of Genetic Markers for Bacteria Genotyping. - Marketa Nykrynova; Denisa Maderankova; Vojtech Barton; Matej Bezdicek; Martina Lengerova; Helena Skutkova (IWBBIO (2), 2019)

Watershed Segmentation for Peak Picking in Mass Spectrometry Data. - Vojtech Barton; Markéta Nykrýnová; Helena Skutková (IWBBIO, 2020)

Detection of Highly Variable Genome Fragments in Unmapped Reads of Escherichia coli Genomes. - Marketa Nykrynova; Vojtech Barton; Matej Bezdicek; Martina Lengerova; Helena Skutkova (IWBBIO, 2020)

MANASIG: Python Package to Manipulate Nanopore Signals From Sequencing Files. - Vojtech Barton; Markéta Nykrýnová; Helena Skutková (BIBM, 2021)

Raw nanopore squiggle alignment for bacterial typing distinction enhancement. - Marketa Nykrynova; Vojtech Barton; Martin Vítek; Matej Bezdicek; Martina Lengerova; Helena Skutkova (BIBM, 2021)

Data Transformation for Clustering Utilization for Feature Detection in Mass Spectrometry. - Vojtech Barton; Helena Skutkova (IWBBIO (2), 2022)

Bacterial phenotype prediction based on methylation site profiles. - Marketa Nykrynova; Matej Bezdicek; Martina Lengerova; Helena Skutkova (CIBCB, 2023)