ProcaryaSV: structural variation detection pipeline for bacterial genomes using short-read sequencing. - Robin Jugas; Helena Vitkova (BMC Bioinform., 2023)

Exploring DNA Methylation Patterns in the Core Genome of Klebsiella pneumoniae. - Marketa Nykrynova; Matej Bezdicek; Martina Lengerova; Helena Vitkova (IWBBIO (2), 2024)

Unveiling Diversity: Classification of Klebsiella Pneumoniae Plasmids from Long-read Assemblies. - Helena Vitkova; Marketa Nykrynova; Matej Bezdicek; Martina Lengerova (IWBBIO (2), 2024)