Detecting Localized Repeats in Genomic Sequences: A New Strategy and Its Application to Bacillus Subtilis and Arabidopsis Thaliana Sequences. - Maude Klaerr-Blanchard; Hélène Chiapello; Eivind Coward (Comput. Chem., 2000)

SPiD: a subtilis protein interaction database. - Mark Hoebeke; Hélène Chiapello; Philippe Noirot; Philippe Bessières (Bioinform., 2001)

Deciphering Arabidopsis Thaliana Gene Neighborhoods Through Bibliographic Co-citations. - Alexandra Louis; Hélène Chiapello; Cécilia Fabry; Emmanuelle Ollivier; Alain Hénaut (Comput. Chem., 2002)

Systematic determination of the mosaic structure of bacterial genomes: species backbone versus strain-specific loops. - Hélène Chiapello; I. Bourgait; F. Sourivong; G. Heuclin; Annie Gendrault-Jacquemard; Marie-Agnès Petit; Meriem El Karoui (BMC Bioinform., 2005)

AnovArray: a set of SAS macros for the analysis of variance of gene expression data. - Christelle Hennequet-Antier; Hélène Chiapello; Karine Piot; Séverine A. Degrelle; Isabelle Hue; Jean-Paul Renard; François Rodolphe; Stéphane Robin (BMC Bioinform., 2005)

MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level. - Hélène Chiapello; Annie Gendrault; Christophe Caron; Jérome Blum; Marie-Agnès Petit; Meriem El Karoui (BMC Bioinform., 2008)

FUNYBASE: a FUNgal phYlogenomic dataBASE. - Sylvain Marthey; Gabriela Aguileta; François Rodolphe; Annie Gendrault; Tatiana Giraud; Elisabeth Fournier; Manuela Lopez-Villavicencio; Angélique Gautier; Marc-Henri Lebrun; Hélène Chiapello (BMC Bioinform., 2008)

Assessing the Robustness of Complete Bacterial Genome Segmentations. - Hugo Devillers; Hélène Chiapello; Sophie Schbath; Meriem El Karoui (RECOMB-CG, 2010)

Robustness Assessment of Whole Bacterial Genome Segmentations. - Hugo Devillers; Hélène Chiapello; Sophie Schbath; Meriem El Karoui (J. Comput. Biol., 2011)

YOC, A new strategy for pairwise alignment of collinear genomes. - Raluca Uricaru; Célia Michotey; Hélène Chiapello; Eric Rivals (BMC Bioinform., 2015)

PhylOligo: a package to identify contaminant or untargeted organism sequences in genome assemblies. - Ludovic Mallet; Tristan Bitard-Feildel; Franck Cerutti; Hélène Chiapello (Bioinform., 2017)