FORRepeats: detects repeats on entire chromosomes and between genomes. - Arnaud Lefebvre; Thierry Lecroq; Hélène Dauchel; Joël Alexandre (Bioinform., 2003)

EVA: Exome Variation Analyzer, an efficient and versatile tool for filtering strategies in medical genomics. - Sophie Coutant; Chloé Cabot; Arnaud Lefebvre; Martine Léonard; Élise Prieur-Gaston; Dominique Campion; Thierry Lecroq; Hélène Dauchel (BMC Bioinform., 2012)

UMI-VarCal: a new UMI-based variant caller that efficiently improves low-frequency variant detection in paired-end sequencing NGS libraries. - Vincent Sater; Pierre-Julien Viailly; Thierry Lecroq; Élise Prieur-Gaston; Élodie Bohers; Mathieu Viennot; Philippe Ruminy; Hélène Dauchel; Pierre Vera; Fabrice Jardin (Bioinform., 2020)

Improving high-resolution copy number variation analysis from next generation sequencing using unique molecular identifiers. - Pierre-Julien Viailly; Vincent Sater; Mathieu Viennot; Élodie Bohers; Nicolas Vergne; Caroline Bérard; Hélène Dauchel; Thierry Lecroq; Alison Celebi; Philippe Ruminy; Vinciane Marchand; Marie-Delphine Lanic; et al. (BMC Bioinform., 2021)