Force and Cirial of Torsional-Angle-Dependent Potentials. - Henk Bekker; H. J. C. Berendesen; Wilfred F. van Gunsteren (J. Comput. Chem., 1995)

LINCS: A linear constraint solver for molecular simulations. - Berk Hess; Henk Bekker; Herman J. C. Berendsen; Johannes G. E. M. Fraaije (J. Comput. Chem., 1997)

Similarity Measure Computation of Convex Polyhedra Revisited. - Jos B. T. M. Roerdink; Henk Bekker (Digital and Image Geometry, 2000)

An Efficient Algorithm to Calculate the Minkowski Sum of Convex 3D Polyhedra. - Henk Bekker; Jos B. T. M. Roerdink (International Conference on Computational Science (1), 2001)

Mapping Graphs on the Sphere to the Finite Plane. - Henk Bekker; Koen De Raedt (International Conference on Computational Science (3), 2002)

Constructing a Near-Minimal-Volume Computational Box for Molecular Dynamics Simulations with Periodic Boundary Conditions. - Henk Bekker; Jur P. van den Berg; Tsjerk A. Wassenaar (International Conference on Computational Science, 2003)

Reducing the Time Complexity of Minkowski-Sum Based Similarity Calculations by Using Geometric Inequalities. - Henk Bekker; Axel Brink (ICCSA (3), 2004)

A method to obtain a near-minimal-volume molecular simulation of a macromolecule, using periodic boundary conditions and rotational constraints. - Henk Bekker; Jur P. van den Berg; Tsjerk A. Wassenaar (J. Comput. Chem., 2004)

Using Bipartite and Multidimensional Matching to Select the Roots of a System of Polynomial Equations. - Henk Bekker; E. P. Braad; Boris Goldengorin (ICCSA (4), 2005)

Selecting the Roots of a Small System of Polynomial Equations by Tolerance Based Matching. - Henk Bekker; E. P. Braad; Boris Goldengorin (WEA, 2005)

Reducing the Time Complexity and Identifying Ill-posed Problem Instances of Minkowski Sum Based Similarity calculations. - Henk Bekker; Axel Brink; Jos B. T. M. Roerdink (Int. J. Comput. Geom. Appl., 2009)

Depth-Dependent Halos: Illustrative Rendering of Dense Line Data. - Maarten H. Everts; Henk Bekker; Jos B. T. M. Roerdink; Tobias Isenberg 001 (IEEE Trans. Vis. Comput. Graph., 2009)

Illustrative Line Styles for Flow Visualization. - Maarten H. Everts; Henk Bekker; Jos B. T. M. Roerdink; Tobias Isenberg 001 (PG (Short Papers), 2011)

Illustrative Molecular Visualization with Continuous Abstraction. - Matthew van der Zwan; Wouter Lueks; Henk Bekker; Tobias Isenberg 001 (Comput. Graph. Forum, 2011)

Interactive Illustrative Line Styles and Line Style Transfer Functions for Flow Visualization. - Maarten H. Everts; Henk Bekker; Jos B. T. M. Roerdink; Tobias Isenberg 001 (CoRR, 2015)

Exploration of the Brain's White Matter Structure through Visual Abstraction and Multi-Scale Local Fiber Tract Contraction. - Maarten H. Everts; Eric Begue; Henk Bekker; Jos B. T. M. Roerdink; Tobias Isenberg 001 (IEEE Trans. Vis. Comput. Graph., 2015)