Advancing New Testament interpretation through spatio-temporal analysis: Demonstrated by case studies. - Vincent van Altena; Henk C. den Bakker; Jantien E. Stoter (Trans. GIS, 2018)

Mashtree: a rapid comparison of whole genome sequence files. - Lee S. Katz; Taylor Griswold; Shatavia Morrison; Jason Caravas; Shaokang Zhang; Henk C. den Bakker; Xiangyu Deng; Heather Carleton (J. Open Source Softw., 2019)

Sepia, a taxonomy oriented read classifier in Rust. - Henk C. den Bakker; Lee S. Katz (J. Open Source Softw., 2021)

SneakerNet: A modular quality assurance and quality check workflow for primary genomic and metagenomic read data. - Taylor Griswold; Curtis Kapsak; Jessica C. Chen; Henk C. den Bakker; Grant Williams; Alyssa Kelley; Eshaw Vidyaprakash; Lee S. Katz (J. Open Source Softw., 2021)

GIS as a heuristic tool to interpret ancient historiography: A case study to reconstruct what could plausibly have happened according to the accounts in New Testament texts. - Vincent van Altena; Jan Krans; Henk C. den Bakker; Jantien E. Stoter (Trans. GIS, 2021)

Fasten: a toolkit for streaming operations on fastq files. - Lee S. Katz; John Phan; Henk C. den Bakker (J. Open Source Softw., 2024)

Mashpit: sketching out genomic epidemiology. - Tongzhou Xu; Henk C. den Bakker; Xiangyu Deng; Lee S. Katz (J. Open Source Softw., 2024)