ShrinkBayes: a versatile R-package for analysis of count-based sequencing data in complex study designs. - Mark A. van de Wiel; Maarten Neerincx; Tineke E. Buffart; Daoud Sie; Henk M. W. Verheul (BMC Bioinform., 2014)

OpenClinica. - Marinel Cavelaars; Jacob Rousseau; Cuneyt Parlayan; Sander de Ridder; Annemarie Verburg; Ruud Ross; Gerben Visser; Annelies Rotte; Rita Azevedo; Jan-Willem Boiten; Gerrit A. Meijer; Jeroen A. M. Beliën; et al. (J. Clin. Bioinform., 2015)

Rscreenorm: normalization of CRISPR and siRNA screen data for more reproducible hit selection. - Costa Bachas; Jasmina Hodzic; Johannes C. van der Mijn; Chantal Stoepker; Henk M. W. Verheul; Rob M. F. Wolthuis; Emanuela Felley-Bosco; Wessel N. van Wieringen; Victor W. van Beusechem; Ruud H. Brakenhoff; Renée X. de Menezes (BMC Bioinform., 2018)