LOCO: Composition Microworlds in LOGO. - Peter Desain; Henkjan Honing (ICMC, 1986)

A Connectionist Quantizer. - Peter Desain; Henkjan Honing; Klaus de Rijk (ICMC, 1989)

POCO: An Environment for Analysing, Modifying and Generating Expression in Music. - Henkjan Honing (ICMC, 1990)

Tempo Curves Considered Harmful. - Peter Desain; Henkjan Honing (ICMC, 1991)

Generalized Time Functions. - Peter Desain; Henkjan Honing (ICMC, 1991)

Expresso, a Strong and Small Editor for Expression. - Henkjan Honing (ICMC, 1992)

On Continuous Musical Control of Discrete Musical Objects. - Peter Desain; Henkjan Honing (ICMC, 1993)

A microworld approach to the formalization of musical knowledge. - Henkjan Honing (Comput. Humanit., 1993)

Foot-tapping: a brief intoduction to beat induction. - Peter Desain; Henkjan Honing (ICMC, 1994)

Rulebased models of initial beat induction and an analysis of their behavior. - Peter Desain; Henkjan Honing (ICMC, 1994)

Advanced issues in beat induction modeling: syncopation, tempo and timing. - Peter Desain; Henkjan Honing (ICMC, 1994)

Towards Algorithmic Descriptions of Continuous Modulations of Musical Parameters. - Peter Desain; Henkjan Honing (ICMC, 1995)

Physical Motion as a Metaphor for Timing in Music: The Final Ritard. - Peter Desain; Henkjan Honing (ICMC, 1996)

Robust Score-Performance Matching: Taking Advantage of Structural Information. - Peter Desain; Henkjan Honing; Hank Heijink (ICMC, 1997)

On tempo tracking: Tempogram Representation and Kalman filtering. - Ali Taylan Cemgil; Bert Kappen; Peter Desain; Henkjan Honing (ICMC, 2000)

Make Me a Match: An Evaluation of Different Approaches to Score - Performance Matching. - Hank Heijink; Peter Desain; Henkjan Honing; Luke Windsor (Comput. Music. J., 2000)

Refined Knowledge-Based ƒ0 Tracking: Comparing Three Frequency Extraction Methods. - Stéphane Rossignol; Peter Desain; Henkjan Honing (ICMC, 2001)

Spectral analysis of timing profiles of piano performances. - Paul Trilsbeek; Peter Desain; Henkjan Honing (ICMC, 2001)

From Time to Time: The Representation of Timing and Tempo. - Henkjan Honing (Comput. Music. J., 2001)

The Final Ritard: On Music, Motion, and Kinematic Models. - Henkjan Honing (Comput. Music. J., 2003)

Timing is Tempo-Specific. - Henkjan Honing (ICMC, 2005)

Evaluating and Extending Computational Models of Rhythmic Syncopation in Music. - Leigh M. Smith; Henkjan Honing (ICMC, 2006)

The Role of ICT in Music Research: A Bridge too far? - Henkjan Honing (Int. J. Humanit. Arts Comput., 2007)

Model cortical responses for the detection of perceptual onsets and beat tracking in singing. - Martin Coath; Susan L. Denham; Leigh M. Smith; Henkjan Honing; Amaury Hazan; Piotr Holonowicz; Hendrik Purwins (Connect. Sci., 2009)

Cognition and the Evolution of Music: Pitfalls and Prospects. - Henkjan Honing; Annemie Ploeger (Top. Cogn. Sci., 2012)

Designing Games with a Purpose for Data Collection in Music Research. Emotify and Hooked: Two Case Studies. - Anna Aljanaki; Dimitrios Bountouridis; John Ashley Burgoyne; Jan Van Balen; Frans Wiering; Henkjan Honing; Remco C. Veltkamp (GALA, 2013)

Hooked: A Game For Discovering What Makes Music Catchy. - John Ashley Burgoyne; Dimitrios Bountouridis; Jan Van Balen; Henkjan Honing (ISMIR, 2013)

Beat-based and Memory-based Temporal Expectations in Rhythm: Similar Perceptual Effects, Different Underlying Mechanisms. - Fleur L. Bouwer; Henkjan Honing; Heleen A. Slagter (J. Cogn. Neurosci., 2020)