Unsupervised Decision Trees Structured by Gene Ontology (GO-UDTs) for the Interpretation of Microarray Data. - Henning Redestig; Florian Sohler; Ralf Zimmer; Joachim Selbig (GfKl, 2006)

PageMan: An interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments. - Björn Usadel; Axel Nagel; Dirk Steinhauser; Yves Gibon; Oliver E. Bläsing; Henning Redestig; Nese Sreenivasulu; Leonard Krall; Matthew A. Hannah; Fabien Poree; Alisdair R. Fernie; Mark Stitt (BMC Bioinform., 2006)

Integrative Analysis of Transcriptome and Metabolome Data. - Lothar Willmitzer; Camila Caldana; Alisdair R. Fernie; Patrick Giavalisco; Matthew A. Hannah; Henning Redestig; Dirk Steinhauser (German Conference on Bioinformatics, 2007)

pcaMethods - a bioconductor package providing PCA methods for incomplete data. - Wolfram Stacklies; Henning Redestig; Matthias Scholz; Dirk Walther 001; Joachim Selbig (Bioinform., 2007)

Transcription factor target prediction using multiple short expression time series from Arabidopsis thaliana. - Henning Redestig; Daniel Weicht; Joachim Selbig; Matthew A. Hannah (BMC Bioinform., 2007)

TargetSearch - a Bioconductor package for the efficient preprocessing of GC-MS metabolite profiling data. - Álvaro Cuadros-Inostroza; Camila Caldana; Henning Redestig; Miyako Kusano; Jan Lisec; Hugo Peña-Cortés; Lothar Willmitzer; Matthew A. Hannah (BMC Bioinform., 2009)

Consolidating metabolite identifiers to enable contextual and multi-platform metabolomics data analysis. - Henning Redestig; Miyako Kusano; Atsushi Fukushima; Fumio Matsuda; Kazuki Saito; Masanori Arita (BMC Bioinform., 2010)

Detection and interpretation of metabolite-transcript coresponses using combined profiling data. - Henning Redestig; Ivan G. Costa (Bioinform., 2011)

Determining novel functions of Arabidopsis 14-3-3 proteins in central metabolic processes. - Celine Diaz; Miyako Kusano; Ronan Sulpice; Mitsutaka Araki; Henning Redestig; Kazuki Saito; Mark Stitt; Ryoung Shin (BMC Syst. Biol., 2011)

Metabolomic correlation-network modules in Arabidopsis based on a graph-clustering approach. - Atsushi Fukushima; Miyako Kusano; Henning Redestig; Masanori Arita; Kazuki Saito (BMC Syst. Biol., 2011)

Exploring molecular backgrounds of quality traits in rice by predictive models based on high-coverage metabolomics. - Henning Redestig; Miyako Kusano; Kaworu Ebana; Makoto Kobayashi; Akira Oikawa; Yozo Okazaki; Fumio Matsuda; Masanori Arita; Naoko Fujita; Kazuki Saito (BMC Syst. Biol., 2011)

The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements. - Adrian M. Altenhoff; Nives Skunca; Natasha M. Glover; Clément-Marie Train; Anna Sueki; Ivana Pilizota; Kevin Gori; Bartlomiej Tomiczek; Steven Müller; Henning Redestig; Gaston H. Gonnet; Christophe Dessimoz (Nucleic Acids Res., 2015)

Prioritising candidate genes causing QTL using hierarchical orthologous groups. - Alex Warwick Vesztrocy; Christophe Dessimoz; Henning Redestig (Bioinform., 2018)

The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces. - Adrian M. Altenhoff; Natasha M. Glover; Clément-Marie Train; Klara Kaleb; Alex Warwick Vesztrocy; David Dylus; Tarcisio M. Farias; Karina Zile; Charles Stevenson; Jiao Long; Henning Redestig; Gaston H. Gonnet; et al. (Nucleic Acids Res., 2018)

Phylogenetic approaches to identifying fragments of the same gene, with application to the wheat genome. - Ivana Pilizota; Clément-Marie Train; Adrian M. Altenhoff; Henning Redestig; Christophe Dessimoz (Bioinform., 2019)