UMLS mapping and Word embeddings for ICD code assignment using the MIMIC-III intensive care database. - Henning Schäfer; Christoph M. Friedrich (EMBC, 2019)

Multilingual ICD-10 Code Assignment with Transformer Architectures using MIMIC-III Discharge Summaries. - Henning Schäfer; Christoph M. Friedrich (CLEF (Working Notes), 2020)

WisPerMed Text at TREC Clinical Trials Track 2021. - Henning Schäfer; Ahmad Idrissi-Yaghir; Wolfgang Galetzka; Marie Bexte; Christoph M. Friedrich (TREC, 2021)

Heart Rate Estimation based on Optical Flow: Enabling Smooth Angle Changes in Ultrasound Simulation. - Henning Schäfer; Hendrik Damm; Christoph M. Friedrich (BIOSIGNALS, 2022)

Overview of the ImageCLEF 2022: Multimedia Retrieval in Medical, Social Media and Nature Applications. - Bogdan Ionescu; Henning Müller; Renaud Péteri; Johannes Rückert; Asma Ben Abacha; Alba Garcia Seco de Herrera; Christoph M. Friedrich; Louise Bloch; Raphael Brüngel; Ahmad Idrissi-Yaghir; Henning Schäfer; Serge Kozlovski; et al. (CLEF, 2022)

Overview of ImageCLEFmedical 2022 - Caption Prediction and Concept Detection. - Johannes Rückert; Asma Ben Abacha; Alba Garcia Seco de Herrera; Louise Bloch; Raphael Brüngel; Ahmad Idrissi-Yaghir; Henning Schäfer; Henning Müller; Christoph M. Friedrich (CLEF (Working Notes), 2022)

ImageCLEF 2022: Multimedia Retrieval in Medical, Nature, Fusion, and Internet Applications. - Alba Garcia Seco de Herrera; Bogdan Ionescu; Henning Müller; Renaud Péteri; Asma Ben Abacha; Christoph M. Friedrich; Johannes Rückert; Louise Bloch; Raphael Brüngel; Ahmad Idrissi-Yaghir; Henning Schäfer; Serge Kozlovski; et al. (ECIR (2), 2022)

Overview of the ImageCLEF 2023: Multimedia Retrieval in Medical, Social Media and Internet Applications. - Bogdan Ionescu; Henning Müller; Ana-Maria Dragulinescu; Wen-wai Yim; Asma Ben Abacha; Neal Snider; Griffin Adams; Meliha Yetisgen; Johannes Rückert; Alba García Seco de Herrera; Christoph M. Friedrich; Louise Bloch; et al. (CLEF, 2023)

Overview of ImageCLEFmedical 2023 - Caption Prediction and Concept Detection. - Johannes Rückert; Asma Ben Abacha; Alba Garcia Seco de Herrera; Louise Bloch; Raphael Brüngel; Ahmad Idrissi-Yaghir; Henning Schäfer; Henning Müller; Christoph M. Friedrich (CLEF (Working Notes), 2023)

ImageCLEF 2023 Highlight: Multimedia Retrieval in Medical, Social Media and Content Recommendation Applications. - Bogdan Ionescu; Henning Müller; Ana-Maria Claudia Dragulinescu; Adrian Popescu 001; Ahmad Idrissi-Yaghir; Alba García Seco de Herrera; Alexandra Andrei; Alexandru Stan; Andrea M. Storås; Asma Ben Abacha; Christoph M. Friedrich; George Ioannidis; et al. (ECIR (3), 2023)

Medication event extraction in clinical notes: Contribution of the WisPerMed team to the n2c2 2022 challenge. - Henning Schäfer; Ahmad Idrissi-Yaghir; Jeanette Bewersdorff; Sameh Frihat; Christoph M. Friedrich; Torsten Zesch (J. Biomed. Informatics, 2023)

Domain Adaptation of Transformer-Based Models Using Unlabeled Data for Relevance and Polarity Classification of German Customer Feedback. - Ahmad Idrissi-Yaghir; Henning Schäfer; Nadja Bauer; Christoph M. Friedrich (SN Comput. Sci., 2023)

ROCOv2: Radiology Objects in COntext Version 2, An Updated Multimodal Image Dataset. - Johannes Rückert; Christoph Balada; Raphael Brüngel; Ahmad Idrissi-Yaghir; Henning Schäfer; Cynthia S. Schmidt; Sven Koitka; Obioma Pelka; Asma Ben Abacha; Alba Garcia Seco de Herrera; Henning Müller; Peter A. Horn; et al. (Zenodo, 2023)

ROCOv2: Radiology Objects in COntext Version 2, An Updated Multimodal Image Dataset. - Johannes Rückert; Louise Bloch; Raphael Brüngel; Ahmad Idrissi-Yaghir; Henning Schäfer; Cynthia S. Schmidt; Sven Koitka; Obioma Pelka; Asma Ben Abacha; Alba Garcia Seco de Herrera; Henning Müller; Peter A. Horn; et al. (Zenodo, 2023)

WisPerMed at "Discharge Me!": Advancing Text Generation in Healthcare with Large Language Models, Dynamic Expert Selection, and Priming Techniques on MIMIC-IV. - Hendrik Damm; Tabea Margareta Grace Pakull; Bahadir Eryilmaz; Helmut Becker; Ahmad Idrissi-Yaghir; Henning Schäfer; Sergej Schultenkämper; Christoph M. Friedrich (BioNLP@ACL, 2024)

WisPerMed at BioLaySumm: Adapting Autoregressive Large Language Models for Lay Summarization of Scientific Articles. - Tabea Margareta Grace Pakull; Hendrik Damm; Ahmad Idrissi-Yaghir; Henning Schäfer; Peter A. Horn; Christoph M. Friedrich (BioNLP@ACL, 2024)

Overview of the ImageCLEF 2024: Multimedia Retrieval in Medical Applications. - Bogdan Ionescu; Henning Müller; Ana-Maria Dragulinescu; Johannes Rückert; Asma Ben Abacha; Alba García Seco de Herrera; Louise Bloch; Raphael Brüngel; Ahmad Idrissi-Yaghir; Henning Schäfer; Cynthia Sabrina Schmidt; Tabea Margareta Grace Pakull; et al. (CLEF (2), 2024)

Overview of ImageCLEFmedical 2024 - Caption Prediction and Concept Detection. - Johannes Rückert; Asma Ben Abacha; Alba Garcia Seco de Herrera; Louise Bloch; Raphael Brüngel; Ahmad Idrissi-Yaghir; Henning Schäfer; Benjamin Bracke; Hendrik Damm; Tabea Margareta Grace Pakull; Cynthia Sabrina Schmidt; Henning Müller; et al. (CLEF (Working Notes), 2024)

Comprehensive Study on German Language Models for Clinical and Biomedical Text Understanding. - Ahmad Idrissi-Yaghir; Amin Dada; Henning Schäfer; Kamyar Arzideh; Giulia Baldini 001; Jan Trienes; Max Hasin; Jeanette Bewersdorff; Cynthia S. Schmidt; Marie Bauer; Kaleb E. Smith; Jiang Bian 001; et al. (LREC/COLING, 2024)

Advancing Multimedia Retrieval in Medical, Social Media and Content Recommendation Applications with ImageCLEF 2024. - Bogdan Ionescu; Henning Müller; Ana-Maria Claudia Dragulinescu; Ahmad Idrissi-Yaghir; Ahmedkhan Radzhabov; Alba Garcia Seco de Herrera; Alexandra Andrei; Alexandru Stan; Andrea M. Storås; Asma Ben Abacha; Benjamin Lecouteux; Benno Stein 001; et al. (ECIR (6), 2024)

ROCOv2: Radiology Objects in COntext Version 2, an Updated Multimodal Image Dataset. - Johannes Rückert; Louise Bloch; Raphael Brüngel; Ahmad Idrissi-Yaghir; Henning Schäfer; Cynthia S. Schmidt; Sven Koitka; Obioma Pelka; Asma Ben Abacha; Alba García Seco de Herrera; Henning Müller; Peter A. Horn; et al. (CoRR, 2024)

Overview of ImageCLEF 2025: Multimedia Retrieval in Medical, Social Media and Content Recommendation Applications. - Bogdan Ionescu; Henning Müller; Dan-Cristian Stanciu; Alexandra-Georgiana Andrei; Ahmedkhan Radzhabov; Yuri Prokopchuk; Liviu-Daniel Stefan; Mihai Gabriel Constantin; Mihai Dogariu; Vassili Kovalev; Hendrik Damm; Johannes Rückert; et al. (CLEF, 2025)

ImageCLEF 2025: Multimedia Retrieval in Medical, Social Media and Content Recommendation Applications. - Bogdan Ionescu; Henning Müller; Dan-Cristian Stanciu; Ahmad Idrissi-Yaghir; Ahmedkhan Radzhabov; Alba García Seco de Herrera; Alexandra Andrei; Andrea M. Storås; Asma Ben Abacha; Benjamin Bracke; Benjamin Lecouteux; Benno Stein 001; et al. (ECIR (5), 2025)

From BERT to generative AI - Comparing encoder-only vs. large language models in a cohort of lung cancer patients for named entity recognition in unstructured medical reports. - Kamyar Arzideh; Henning Schäfer; Héctor Allende-Cid; Giulia Baldini 001; Thomas Hilser; Ahmad Idrissi-Yaghir; Katharina Laue; Nilesh Chakraborty; Niclas Doll; Dario Antweiler; Katrin Klug; Niklas Beck; et al. (Comput. Biol. Medicine, 2025)

A Multimodal Pipeline for Clinical Data Extraction: Applying Vision-Language Models to Scans of Transfusion Reaction Reports. - Henning Schäfer; Cynthia S. Schmidt; Johannes Wutzkowsky; Kamil Lorek; Lea Reinartz; Johannes Rückert; Christian Temme; Britta Böckmann; Peter A. Horn; Christoph M. Friedrich (CoRR, 2025)