PDB_Hydro: incorporating dipolar solvents with variable density in the Poisson-Boltzmann treatment of macromolecule electrostatics. - Cyril Azuara; Erik Lindahl; Patrice Koehl; Henri Orland; Marc Delarue (Nucleic Acids Res., 2006)

MISTRAL: a tool for energy-based multiple structural alignment of proteins. - Cristian Micheletti; Henri Orland (Bioinform., 2009)

Knotted vs. Unknotted Proteins: Evidence of Knot-Promoting Loops. - Raffaello Potestio; Cristian Micheletti; Henri Orland (PLoS Comput. Biol., 2010)

AquaSAXS: a web server for computation and fitting of SAXS profiles with non-uniformally hydrated atomic models. - Frédéric Poitevin; Henri Orland; Sebastian Doniach; Patrice Koehl; Marc Delarue (Nucleic Acids Res., 2011)

Probing the binding affinity of amyloids to reduce toxicity of oligomers in diabetes. - Mohamed Raef Smaoui; Henri Orland; Jérôme Waldispühl (Bioinform., 2015)

Parameterizing elastic network models to capture the dynamics of proteins. - Patrice Koehl; Henri Orland; Marc Delarue (J. Comput. Chem., 2021)

Computing the Gromov-Wasserstein Distance between Two Surface Meshes Using Optimal Transport. - Patrice Koehl; Marc Delarue; Henri Orland (Algorithms, 2023)

A Physicist's View on Partial 3D Shape Matching. - Patrice Koehl; Henri Orland (Algorithms, 2023)

A General Statistical Physics Framework for Assignment Problems. - Patrice Koehl; Henri Orland (Algorithms, 2024)