SEPON, a Selection and Evaluation Pipeline for OligoNucleotides based on ESTs with a non-target Tm algorithm for reducing cross-hybridization in microarray gene expression experiments. - Henrik Hornshøj; Henrik Stengaard; Frank Panitz; Christian Bendixen (Bioinform., 2004)

SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation. - Frank Panitz; Henrik Stengaard; Henrik Hornshøj; Jan Gorodkin; Jakob Hedegaard; Susanna Cirera; Bo Thomsen; Lone B. Madsen; Anette Høj; Rikke K. Vingborg; Bujie Zahn; Xuegang Wang; et al. (ISMB/ECCB (Supplement of Bioinformatics), 2007)

A site specific model and analysis of the neutral somatic mutation rate in whole-genome cancer data. - Johanna Bertl; Qianyun Guo; Malene Juul; Søren Besenbacher; Morten Muhlig Nielsen; Henrik Hornshøj; Jakob Skou Pedersen; Asger Hobolth (BMC Bioinform., 2018)

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. - Esther Rheinbay; Morten Muhlig Nielsen; Federico Abascal; Jeremiah Wala; Ofer Shapira; Grace Tiao; Henrik Hornshøj; Julian M. Hess; Randi Istrup Juul; Ziao Lin; Lars Feuerbach; Radhakrishnan Sabarinathan; et al. (Nat., 2020)