KeyPathwayMiner 4.0: condition-specific pathway analysis by combining multiple omics studies and networks with Cytoscape. - Nicolas Alcaraz; Josch Pauling; Richa Batra; Eudes Barbosa; Alexander Junge; Anne Christensen; Vasco Ariston de Carvalho Azevedo; Henrik J. Ditzel; Jan Baumbach (BMC Syst. Biol., 2014)

A Simulated Annealing Algorithm for Maximum Common Edge Subgraph Detection in Biological Networks. - Simon J. Larsen; Frederik G. Alkærsig; Henrik J. Ditzel; Igor Jurisica; Nicolas Alcaraz; Jan Baumbach (GECCO, 2016)

Robust de novo pathway enrichment with KeyPathwayMiner 5. - Nicolas Alcaraz; Markus List; Martin Dissing-Hansen; Marc Rehmsmeier; Qihua Tan; Jan Mollenhauer; Henrik J. Ditzel; Jan Baumbach (F1000Research, 2016)

KeyPathwayMinerWeb: online multi-omics network enrichment. - Markus List; Nicolas Alcaraz; Martin Dissing-Hansen; Henrik J. Ditzel; Jan Mollenhauer; Jan Baumbach (Nucleic Acids Res., 2016)