Finding motifs for insufficient number of sequences with strong binding to transcription facto. - Francis Y. L. Chin; Henry C. M. Leung; Siu-Ming Yiu; Tak Wah Lam; Roni Rosenfeld; Wai Wan Tsang; David K. Smith 001; Y. Jiang (RECOMB, 2004)

Voting algorithms for discovering long motifs. - Francis Y. L. Chin; Henry C. M. Leung (APBC, 2005)

An Efficient Algorithm for the Extended (l, d)-Motif Problem with Unknown Number of Binding Sites. - Henry C. M. Leung; Francis Y. L. Chin (BIBE, 2005)

Finding exact optimal motifs in matrix representation by partitioning. - Henry C. M. Leung; Francis Y. L. Chin (ECCB/JBI, 2005)

Generalized Planted (l, d)-Motif Problem with Negative Set. - Henry C. M. Leung; Francis Y. L. Chin (WABI, 2005)

Finding Motifs with Insufficient Number of Strong Binding Sites. - Henry C. M. Leung; Francis Y. L. Chin; Siu-Ming Yiu; Ronald Rosenfeld; Wai Wan Tsang (J. Comput. Biol., 2005)

An Efficient Algorithm for String Motif Discovery. - Francis Y. L. Chin; Henry C. M. Leung (APBC, 2006)

Discovering DNA Motifs with Nucleotide Dependency. - Henry C. M. Leung; Francis Y. L. Chin (BIBE, 2006)

Finding motifs from all sequences with and without binding sites. - Henry C. M. Leung; Francis Y. L. Chin (Bioinform., 2006)

An efficient motif discovery algorithm with unknown motif length and number of binding sites. - Henry C. M. Leung; Francis Y. L. Chin (Int. J. Data Min. Bioinform., 2006)

Algorithms for Challenging Motif Problems. - Henry C. M. Leung; Francis Y. L. Chin (J. Bioinform. Comput. Biol., 2006)

Changes in effective connectivity during incidental and intentional perception of fearful faces. - Giovanni de Marco; Monique de Bonis; P. Vrignaud; Henry C. M. Leung; I. Peretti (NeuroImage, 2006)

Motif discovery for DNA sequences - Henry C. M. Leung (2006)

Discovering Motifs With Transcription Factor Domain Knowledge. - Henry C. M. Leung; Francis Y. L. Chin; Bethany Man-Yee Chan (Pacific Symposium on Biocomputing, 2007)

The Point Placement Problem on a Line - Improved Bounds for Pairwise Distance Queries. - Francis Y. L. Chin; Henry C. M. Leung; Wing-Kin Sung; Siu-Ming Yiu (WABI, 2007)

Optimal Algorithm for Finding DNA Motifs with Nucleotide Adjacent Dependency. - Francis Y. L. Chin; Henry C. M. Leung; Man-Hung Siu; Siu-Ming Yiu (APBC, 2008)

DNA Motif Representation with Nucleotide Dependency. - Francis Y. L. Chin; Henry C. M. Leung (IEEE ACM Trans. Comput. Biol. Bioinform., 2008)

Unsupervised binning of environmental genomic fragments based on an error robust selection of l-mers. - Bin Yang; Yu Peng; Henry C. M. Leung; Siu-Ming Yiu; Jing-Chi Chen; Francis Y. L. Chin (DTMBIO, 2009)

Finding optimal threshold for correction error reads in DNA assembling. - Francis Y. L. Chin; Henry C. M. Leung; Wei-Lin Li; Siu-Ming Yiu (BMC Bioinform., 2009)

Clustering-Based Approach for Predicting Motif Pairs from protein Interaction Data. - Henry Chi-Ming Leung; Man-Hung Siu; Siu-Ming Yiu; Francis Yuk-Lun Chin; Ken Wing-Kin Sung (J. Bioinform. Comput. Biol., 2009)

Predicting Protein Complexes from PPI Data: A Core-Attachment Approach. - Henry C. M. Leung; Qian Xiang; Siu-Ming Yiu; Francis Y. L. Chin (J. Comput. Biol., 2009)

MetaCluster: unsupervised binning of environmental genomic fragments and taxonomic annotation. - Bin Yang; Yu Peng; Henry C. M. Leung; Siu-Ming Yiu; Junjie Qin; Ruiqiang Li; Francis Y. L. Chin (BCB, 2010)

Predicting metabolic pathways from metabolic networks with limited biological knowledge. - Shuen-Yi Leung; Henry C. M. Leung; Carlos Lu Xiang; Siu-Ming Yiu; Francis Y. L. Chin (BIBM Workshops, 2010)

IDBA - A Practical Iterative de Bruijn Graph De Novo Assembler. - Yu Peng; Henry C. M. Leung; Siu-Ming Yiu; Francis Y. L. Chin (RECOMB, 2010)

Unsupervised binning of environmental genomic fragments based on an error robust selection of l-mers. - Bin Yang; Yu Peng; Henry Chi-Ming Leung; Siu-Ming Yiu; Jing-Chi Chen; Francis Yuk-Lun Chin (BMC Bioinform., 2010)

DMPFinder - Finding Differentiating Pathways with Gaps from Two Groups of Metabolic Networks. - Henry Chi-Ming Leung; Shuen-Yi Leung; Carlos Lu Xiang; Siu-Ming Yiu; Francis Yuk-Lun Chin (BICoB, 2011)

Adaptive Phenotype Testing for AND/OR Items. - Francis Y. L. Chin; Henry C. M. Leung; Siu-Ming Yiu (ISAAC, 2011)

T-IDBA: A de novo Iterative de Bruijn Graph Assembler for Transcriptome - (Extended Abstract). - Yu Peng; Henry C. M. Leung; Siu-Ming Yiu; Francis Y. L. Chin (RECOMB, 2011)

A robust and accurate binning algorithm for metagenomic sequences with arbitrary species abundance ratio. - Henry C. M. Leung; Siu-Ming Yiu; Bin Yang; Yu Peng; Yi Wang 042; Zhihua Liu; Jing-Chi Chen; Junjie Qin; Ruiqiang Li; Francis Y. L. Chin (Bioinform., 2011)

Meta-IDBA: a de Novo assembler for metagenomic data. - Yu Peng; Henry C. M. Leung; Siu-Ming Yiu; Francis Y. L. Chin (Bioinform., 2011)

Phylogenetic Tree Reconstruction with Protein Linkage. - Junjie Yu; Henry Chi-Ming Leung; Siu-Ming Yiu; Yong Zhang 001; Francis Y. L. Chin; Nathan Hobbs; Amy Y. X. Wang (ISBRA, 2012)

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth. - Yu Peng; Henry C. M. Leung; Siu-Ming Yiu; Francis Y. L. Chin (Bioinform., 2012)

MetaCluster 5.0: a two-round binning approach for metagenomic data for low-abundance species in a noisy sample. - Yi Wang 042; Henry C. M. Leung; Siu-Ming Yiu; Francis Y. L. Chin (Bioinform., 2012)

MetaCluster 4.0: A Novel Binning Algorithm for NGS Reads and Huge Number of Species. - Yi Wang 042; Henry C. M. Leung; Siu-Ming Yiu; Francis Y. L. Chin (J. Comput. Biol., 2012)

PERGA: A Paired-End Read Guided De Novo Assembler for Extending Contigs Using SVM Approach. - Xiao Zhu; Henry C. M. Leung; Francis Y. L. Chin; Siu-Ming Yiu; Guangri Quan; Bo Liu 023; Yadong Wang 001 (BCB, 2013)

Intra- and inter-sparse multiple output regression with application on environmental microbial community study. - Jie Yang; Henry C. M. Leung; Siu-Ming Yiu; Yunpeng Cai; Francis Y. L. Chin (BIBM, 2013)

Reconstructing k-Reticulated Phylogenetic Network from a Set of Gene Trees. - Hoa Vu; Francis Y. L. Chin; Wing-Kai Hon; Henry C. M. Leung; Kunihiko Sadakane; Ken Wing-Kin Sung; Siu-Ming Yiu (ISBRA, 2013)

IDBA-tran: a more robust de novo de Bruijn graph assembler for transcriptomes with uneven expression levels. - Yu Peng; Henry C. M. Leung; Siu-Ming Yiu; Ming-Ju Lv; Xin-Guang Zhu; Francis Y. L. Chin (Bioinform., 2013)

IDBA-MT: De Novo Assembler for Metatranscriptomic Data Generated from Next-Generation Sequencing Technology. - Henry C. M. Leung; Siu-Ming Yiu; John Parkinson; Francis Y. L. Chin (J. Comput. Biol., 2013)

Non-adaptive complex group testing with multiple positive sets. - Francis Y. L. Chin; Henry C. M. Leung; Siu-Ming Yiu (Theor. Comput. Sci., 2013)

Deterministic polynomial-time algorithms for designing short DNA words. - Ming-Yang Kao; Henry C. M. Leung; He Sun 001; Yong Zhang 001 (Theor. Comput. Sci., 2013)

Predicting drug-target interaction for new drugs using enhanced similarity measures and super-target clustering1. - Jianyu Shi; Siu-Ming Yiu; Yiming Li; Henry C. M. Leung; Francis Y. L. Chin (BIBM, 2014)

Learning Sparse Gaussian Bayesian Network Structure by Variable Grouping. - Jie Yang; Henry C. M. Leung; Siu-Ming Yiu; Yunpeng Cai; Francis Y. L. Chin (ICDM, 2014)

MetaCluster-TA: taxonomic annotation for metagenomic data based on assembly-assisted binning. - Yi Wang 042; Henry Chi-Ming Leung; Siu-Ming Yiu; Francis Y. L. Chin (BMC Genom., 2014)

misFinder: identify mis-assemblies in an unbiased manner using reference and paired-end reads. - Xiao Zhu; Henry C. M. Leung; Rongjie Wang; Francis Y. L. Chin; Siu-Ming Yiu; Guangri Quan; Yajie Li; Rui Zhang; Qinghua Jiang; Bo Liu 023; Yucui Dong; Guohui Zhou; et al. (BMC Bioinform., 2015)

IDBA-MTP: A Hybrid Metatranscriptomic Assembler Based on Protein Information. - Henry C. M. Leung; Siu-Ming Yiu; Francis Y. L. Chin (J. Comput. Biol., 2015)

AC-DIAMOND: Accelerating Protein Alignment via Better SIMD Parallelization and Space-Efficient Indexing. - Huijun Mai; Dinghua Li; Yifan Zhang; Henry Chi-Ming Leung; Ruibang Luo; Hing-Fung Ting; Tak Wah Lam (IWBBIO, 2016)

Mixed Membership Sparse Gaussian Conditional Random Fields. - Jie Yang; Henry C. M. Leung; Siu-Ming Yiu; Francis Y. L. Chin (ADMA, 2017)

MegaGTA: a sensitive and accurate metagenomic gene-targeted assembler using iterative de Bruijn graphs. - Dinghua Li; Yukun Huang; Henry C. M. Leung; Ruibang Luo; Hing-Fung Ting; Tak Wah Lam (BMC Bioinform., 2017)

MegaPath: Low-Similarity Pathogen Detection from Metagenomic NGS Data (Extended Abstract). - Dinghua Li; Henry Chi-Ming Leung; Chi-Kwong Wong; Yifan Zhang; Wai-Chun Law; Yan Xin; Ruibang Luo; Hing-Fung Ting; Tak Wah Lam (ICCABS, 2018)

AC-DIAMOND v1: accelerating large-scale DNA-protein alignment. - Huijun Mai; Yifan Zhang; Dinghua Li; Henry Chi-Ming Leung; Ruibang Luo; Chi-Kwong Wong; Hing-Fung Ting; Tak Wah Lam (Bioinform., 2018)

RENET: A Deep Learning Approach for Extracting Gene-Disease Associations from Literature. - Ye Wu 007; Ruibang Luo; Henry C. M. Leung; Hing-Fung Ting; Tak Wah Lam (RECOMB, 2019)

A powerful conditional gene-based association approach implicated functionally important genes for schizophrenia. - Miao-Xin Li; Lin Jiang; Timothy Shin Heng Mak; Johnny S. H. Kwan; Chao Xue; Peikai Chen; Henry Chi-Ming Leung; Liqian Cui; Tao Li 034; Pak Chung Sham (Bioinform., 2019)

MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read Metagenomics. - Wui Wang Lui; Amy Wing-Sze Leung; Henry C. M. Leung; Yan Xin; Jade L. L. Teng; Patrick C. Y. Woo; Tak Wah Lam; Ruibang Luo (BIBM, 2020)