Correlation AnalyzeR: functional predictions from gene co-expression correlations. - Henry E. Miller; Alexander J. R. Bishop (BMC Bioinform., 2021)

Exploration and analysis of R-loop mapping data with RLBase. - Henry E. Miller; Daniel Montemayor; Janet Li; Simon A. Levy; Roshan Pawar; Stella Hartono; Kumar Sharma; Bess Frost; Frédéric Chedin; Alexander J. R. Bishop (Nucleic Acids Res., 2023)

Diversity by Design: Addressing Mode Collapse Improves scRNA-seq Perturbation Modeling on Well-Calibrated Metrics. - Gabriel M. Mejía 001; Henry E. Miller; Francis J. A. Leblanc; Bo Wang; Brendan Swain; Lucas Paulo de Lima Camillo (CoRR, 2025)