A Perceptual Model for JPEG Applications based on Block Classification Texture Masking and Luminance Masking. - Henry H. Y. Tong; Anastasios N. Venetsanopoulos (ICIP (3), 1998)

MpbPPI: a multi-task pre-training-based equivariant approach for the prediction of the effect of amino acid mutations on protein-protein interactions. - Yang Yue; Shu Li; Lingling Wang; Huanxiang Liu; Henry H. Y. Tong; Shan He (Briefings Bioinform., 2023)

Discovery of novel and potent InhA direct inhibitors by ensemble docking-based virtual screening and biological assays. - Qianqian Zhang; Jianting Han; Yongchang Zhu; Fansen Yu; Xiaopeng Hu; Henry H. Y. Tong; Huanxiang Liu (J. Comput. Aided Mol. Des., 2023)

Advanced deep learning methods for molecular property prediction. - Chao Pang; Henry H. Y. Tong; Leyi Wei (Quant. Biol., 2023)

Themis: advancing precision oncology through comprehensive molecular subtyping and optimization. - Yue Xi; Kun Zheng; Fulan Deng; Yujun Liu; Hourong Sun; Yingxia Zheng; Henry H. Y. Tong; Yuan Ji; Yingchun Zhang; Wantao Chen; Yiming Zhang; Xin Zou; et al. (Briefings Bioinform., 2024)

3DSGIMD: An accurate and interpretable molecular property prediction method using 3D spatial graph focusing network and structure-based feature fusion. - Yanan Tian; Chenbin Wang; Ruiqiang Lu; Henry H. Y. Tong; Xiaoqing Gong; Jiayue Qiu; Shaoliang Peng; Xiaojun Yao; Huanxiang Liu (Future Gener. Comput. Syst., 2024)

Cobdock: an accurate and practical machine learning-based consensus blind docking method. - Sadettin Y. Ugurlu; David W. McDonald; Huangshu Lei; Alan M. Jones; Shu Li; Henry H. Y. Tong; Mark S. Butler; Shan He 001 (J. Cheminformatics, 2024)

DECEPTICON: a correlation-based strategy for RNA-seq deconvolution inspired by a variation of the Anna Karenina principle. - Fulan Deng; Jiawei Zou; Miaochen Wang; Yida Gu; Jiale Wu; Lianchong Gao; Yuan Ji; Henry H. Y. Tong; Jie Chen; Wantao Chen; Lianjiang Tan; Yaoqing Chu; et al. (Briefings Bioinform., 2025)

Deep scSTAR: leveraging deep learning for the extraction and enhancement of phenotype-associated features from single-cell RNA sequencing and spatial transcriptomics data. - Lianchong Gao; Yujun Liu; Jiawei Zou; Fulan Deng; Zheqi Liu; Zhen Zhang; Xinran Zhao; Lei Chen; Henry H. Y. Tong; Yuan Ji; Huangying Le; Xin Zou; et al. (Briefings Bioinform., 2025)

MDD-LLM: Towards Accuracy Large Language Models for Major Depressive Disorder Diagnosis. - Yuyang Sha; Hongxin Pan; Wei Xu; Weiyu Meng; Gang Luo; Xinyu Du; Xiaobing Zhai; Henry H. Y. Tong; Caijuan Shi; Kefeng Li (CoRR, 2025)

Elucidating allosteric signal disruption in PBP2a: impact of N146K/E150K mutations on ceftaroline resistance in methicillin-resistant Staphylococcus aureus. - Fangfang Jiao; Ran Xu; Qing Luo; Xinkang Li; Henry H. Y. Tong; Jingjing Guo (J. Comput. Aided Mol. Des., 2025)