Plasticity of Neocortical Synapses Enables Transitions between Rate and Temporal Coding. - Misha Tsodyks; Henry Markram (ICANN, 1996)

The Information Content of Action Potential Trains - A Synaptic Basis. - Henry Markram; Misha Tsodyks (ICANN, 1997)

An Algorithm for Synaptic Modification Based on Exact Timing of Pre- and Post-Synaptic Action Potentials. - Walter Senn; Misha Tsodyks; Henry Markram (ICANN, 1997)

Competitive Calcium Binding: Implications for Dendritic Calcium Signaling. - Henry Markram; Arnd Roth; Fritjof Helmchen (J. Comput. Neurosci., 1998)

Neural Networks with Dynamic Synapses. - Misha Tsodyks; Klaus Pawelzik; Henry Markram (Neural Comput., 1998)

An Algorithm for Modifying Neurotransmitter Release Probability Based on Pre- and Postsynaptic Spike Timing. - Walter Senn; Henry Markram; Misha Tsodyks (Neural Comput., 2001)

Introduction: Spiking Neurons in Neuroscience and Technology. - Stephen Grossberg; Wolfgang Maass 001; Henry Markram (Neural Networks, 2001)

A New Approach towards Vision Suggested by Biologically Realistic Neural Microcircuit Models. - Wolfgang Maass 001; Robert Legenstein; Henry Markram (Biologically Motivated Computer Vision, 2002)

A Model for Real-Time Computation in Generic Neural Microcircuits. - Wolfgang Maass 001; Thomas Natschläger; Henry Markram (NIPS, 2002)

On the Computational Power of Recurrent Circuits of Spiking Neurons - Wolfgang Maass 001; Henry Markram (Electron. Colloquium Comput. Complex., 2002)

Real-Time Computing Without Stable States: A New Framework for Neural Computation Based on Perturbations. - Wolfgang Maass 001; Thomas Natschläger; Henry Markram (Neural Comput., 2002)

Synapses as dynamic memory buffers. - Wolfgang Maass 001; Henry Markram (Neural Networks, 2002)

Elementary Principles of Nonlinear Synaptic Transmission. - Henry Markram (Computational Models for Neuroscience, 2003)

Deriving physical connectivity from neuronal morphology. - Nir Kalisman; Gilad Silberberg; Henry Markram (Biol. Cybern., 2003)

Perspectives of the high-dimensional dynamics of neural microcircuits from the point of view of low-dimensional readouts. - Stefan Häusler; Henry Markram; Wolfgang Maass 001 (Complex., 2003)

On the computational power of circuits of spiking neurons. - Wolfgang Maass 001; Henry Markram (J. Comput. Syst. Sci., 2004)

NEOBASE: Databasing the Neocortical Microcircuit. - Asif Jan Muhammad; Henry Markram (HealthGrid, 2005)

Accurate dynamical models of interneuronal GABAergic channel physiologies. - James B. Maciokas; Philip H. Goodman; John Kenyon; Maria Toledo-Rodriguez; Henry Markram (Neurocomputing, 2005)

Subthreshold cross-correlations between cortical neurons: A reference model with static synapses. - Ofer Melamed; Gilad Silberberg; Henry Markram; Wulfram Gerstner; Magnus J. E. Richardson (Neurocomputing, 2005)

Short-Term Synaptic Plasticity Orchestrates the Response of Pyramidal Cells and Interneurons to Population Bursts. - Magnus J. E. Richardson; Ofer Melamed; Gilad Silberberg; Wulfram Gerstner; Henry Markram (J. Comput. Neurosci., 2005)

Biology - The blue brain project. - Henry Markram (SC, 2006)

Parallel network simulations with NEURON. - Michele Migliore; C. Cannia; William W. Lytton; Henry Markram; Michael L. Hines (J. Comput. Neurosci., 2006)

Network-Related Challenges and Insights from Neuroscience. - Charles Peck 001; James R. Kozloski; Guillermo A. Cecchi; Sean L. Hill; Felix Schürmann; Henry Markram; Ravi Rao (BIOWIRE, 2007)

Evaluating automated parameter constraining procedures of neuron models by experimental and surrogate data. - Shaul Druckmann; Thomas K. Berger; Sean L. Hill; Felix Schürmann; Henry Markram; Idan Segev (Biol. Cybern., 2008)

Minimal Hodgkin-Huxley type models for different classes of cortical and thalamic neurons. - Martin Pospischil; Maria Toledo-Rodriguez; Cyril Monier; Zuzanna Piwkowska; Thierry Bal; Yves Frégnac; Henry Markram; Alain Destexhe (Biol. Cybern., 2008)

Identifying, tabulating, and analyzing contacts between branched neuron morphologies. - James R. Kozloski; Konstantinos Sfyrakis; Sean L. Hill; Felix Schürmann; Charles Peck 001; Henry Markram (IBM J. Res. Dev., 2008)

Inferring connection proximity in networks of electrically coupled cells by subthreshold frequency response analysis. - Corrado Calì; Thomas K. Berger; Michele Pignatelli; Alan Carleton; Henry Markram; Michele Giugliano (J. Comput. Neurosci., 2008)

Fully implicit parallel simulation of single neurons. - Michael L. Hines; Henry Markram; Felix Schürmann (J. Comput. Neurosci., 2008)

Slow oscillations in neural networks with facilitating synapses. - Ofer Melamed; Omri Barak; Gilad Silberberg; Henry Markram; Misha Tsodyks (J. Comput. Neurosci., 2008)

Multiquantal release underlies the distribution of synaptic efficacies in the neocortex. - Alex Loebel; Gilad Silberberg; Daniela Helbig; Henry Markram; Misha Tsodyks; Magnus J. E. Richardson (Frontiers Comput. Neurosci., 2009)

A component-based extension framework for large-scale parallel simulations in NEURON. - James Gonzalo King; Michael L. Hines; Sean L. Hill; Philip H. Goodman; Henry Markram; Felix Schürmann (Frontiers Neuroinformatics, 2009)

Channelpedia: An Integrative and Interactive Database for Ion Channels. - Rajnish Ranjan; Georges Khazen; Luca Gambazzi; Srikanth Ramaswamy; Sean L. Hill; Felix Schürmann; Henry Markram (Frontiers Neuroinformatics, 2011)

Effective Stimuli for Constructing Reliable Neuron Models. - Shaul Druckmann; Thomas K. Berger; Felix Schürmann; Sean L. Hill; Henry Markram; Idan Segev (PLoS Comput. Biol., 2011)

Models of Neocortical Layer 5b Pyramidal Cells Capturing a Wide Range of Dendritic and Perisomatic Active Properties. - Etay Hay; Sean L. Hill; Felix Schürmann; Henry Markram; Idan Segev (PLoS Comput. Biol., 2011)

Introducing the Human Brain Project. - Henry Markram; Karlheinz Meier; Thomas Lippert; Sten Grillner; Richard S. Frackowiak; Stanislas Dehaene; Alois C. Knoll; Haim Sompolinsky; Kris Verstreken; Javier DeFelipe; Seth Grant; Jean-Pierre Changeux; et al. (FET, 2011)

Liquid Computing in a Simplified Model of Cortical Layer IV: Learning to Balance a Ball. - Dimitri Probst; Wolfgang Maass 001; Henry Markram; Marc-Oliver Gewaltig (ICANN (1), 2012)

Accelerating Range Queries for Brain Simulations. - Farhan Tauheed; Laurynas Biveinis; Thomas Heinis; Felix Schürmann; Henry Markram; Anastasia Ailamaki (ICDE, 2012)

SCOUT: Prefetching for Latent Feature Following Queries. - Farhan Tauheed; Thomas Heinis; Felix Schürmann; Henry Markram; Anastasia Ailamaki (Proc. VLDB Endow., 2012)

A Neuron Membrane Mesh Representation for Visualization of Electrophysiological Simulations. - Sebastien Lasserre; Juan Hernando; Sean L. Hill; Felix Schürmann; Pedro de Miguel Anasagasti; Georges Abou Jaoudé; Henry Markram (IEEE Trans. Vis. Comput. Graph., 2012)

OCTOPUS: Efficient query execution on dynamic mesh datasets. - Farhan Tauheed; Thomas Heinis; Felix Schürmann; Henry Markram; Anastasia Ailamaki (ICDE, 2014)

A Computational Model of Light-Sheet Fluorescence Microscopy using Physically-based Rendering. - Marwan Abdellah; Ahmet Bilgili; Stefan Eilemann; Henry Markram; Felix Schürmann (Eurographics (Posters), 2015)

An algorithm to predict the connectome of neural microcircuits. - Michael W. Reimann; James Gonzalo King; Eilif B. Müller; Srikanth Ramaswamy; Henry Markram (Frontiers Comput. Neurosci., 2015)

An Exclusion Zone for Ca2+ Channels around Docked Vesicles Explains Release Control by Multiple Channels at a CNS Synapse. - Daniel X. Keller; Norbert Babai; Olexiy Kochubey; Yunyun Han; Henry Markram; Felix Schürmann; Ralf Schneggenburger (PLoS Comput. Biol., 2015)

Physically-based in silico light sheet microscopy for visualizing fluorescent brain models. - Marwan Abdellah; Ahmet Bilgili; Stefan Eilemann; Henry Markram; Felix Schürmann (BMC Bioinform., 2015)

Physically-based Rendering of Highly Scattering Fluorescent Solutions using Path Tracing. - Marwan Abdellah; Ahmet Bilgili; Stefan Eilemann; Henry Markram; Felix Schürmann (Eurographics (Posters), 2016)

Quantifying topological invariants of neuronal morphologies. - Lida Kanari; Pawel Dlotko; Martina Scolamiero; Ran Levi; Julian C. Shillcock; Kathryn Hess; Henry Markram (CoRR, 2016)

BluePyOpt: Leveraging Open Source Software and Cloud Infrastructure to Optimise Model Parameters in Neuroscience. - Werner Van Geit; Michael Gevaert; Giuseppe Chindemi; Christian Rössert; Jean-Denis Courcol; Eilif B. Müller; Felix Schürmann; Idan Segev; Henry Markram (Frontiers Neuroinformatics, 2016)

Bio-physically plausible visualization of highly scattering fluorescent neocortical models for in silico experimentation. - Marwan Abdellah; Ahmet Bilgili; Stefan Eilemann; Julian C. Shillcock; Henry Markram; Felix Schürmann (BMC Bioinform., 2017)

Reconstruction and visualization of large-scale volumetric models of neocortical circuits for physically-plausible in silico optical studies. - Marwan Abdellah; Juan Hernando; Nicolas Antille; Stefan Eilemann; Henry Markram; Felix Schürmann (BMC Bioinform., 2017)

A Physically Plausible Model for Rendering Highly Scattering Fluorescent Participating Media. - Marwan Abdellah; Ahmet Bilgili; Stefan Eilemann; Henry Markram; Felix Schürmann (CoRR, 2017)

Cliques of Neurons Bound into Cavities Provide a Missing Link between Structure and Function. - Michael W. Reimann; Max Nolte; Martina Scolamiero; Katharine Turner; Rodrigo Perin; Giuseppe Chindemi; Pawel Dlotko; Ran Levi; Kathryn Hess; Henry Markram (Frontiers Comput. Neurosci., 2017)

NeuroMorphoVis: a collaborative framework for analysis and visualization of neuronal morphology skeletons reconstructed from microscopy stacks. - Marwan Abdellah; Juan Hernando; Stefan Eilemann; Samuel Lapere; Nicolas Antille; Henry Markram; Felix Schürmann (Bioinform., 2018)

A Cell Atlas for the Mouse Brain. - Csaba Erö; Marc-Oliver Gewaltig; Daniel X. Keller; Henry Markram (Frontiers Neuroinformatics, 2018)

A Topological Representation of Branching Neuronal Morphologies. - Lida Kanari; Pawel Dlotko; Martina Scolamiero; Ran Levi; Julian C. Shillcock; Kathryn Hess; Henry Markram (Neuroinformatics, 2018)

The physiological variability of channel density in hippocampal CA1 pyramidal cells and interneurons explored using a unified data-driven modeling workflow. - Rosanna Migliore; Carmen Alina Lupascu; Luca Leonardo Bologna; Armando Romani; Jean-Denis Courcol; Stefano Antonel; Werner Van Geit; Alex M. Thomson; Audrey Mercer; Sigrun Lange; Joanne Falck; Christian Rössert; et al. (PLoS Comput. Biol., 2018)

Corrigendum: A Cell Atlas for the Mouse Brain. - Csaba Erö; Marc-Oliver Gewaltig; Daniel X. Keller; Henry Markram (Frontiers Neuroinformatics, 2019)

A Brief History of Simulation Neuroscience. - Xue Fan; Henry Markram (Frontiers Neuroinformatics, 2019)

Experimentally-constrained biophysical models of tonic and burst firing modes in thalamocortical neurons. - Elisabetta Iavarone; Jane Yi; Ying Shi; Bas-Jan Zandt; Christian O'Reilly; Werner Van Geit; Christian Rössert; Henry Markram; Sean L. Hill (PLoS Comput. Biol., 2019)

Data driven building of realistic neuron model using IBEA and CMA evolution strategies. - Tanguy Damart; Werner Van Geit; Henry Markram (GECCO Companion, 2020)

Interactive visualization and analysis of morphological skeletons of brain vasculature networks with VessMorphoVis. - Marwan Abdellah; Nadir Román Guerrero; Samuel Lapere; Jay S. Coggan; Daniel X. Keller; Benoit Coste; Snigdha Dagar; Jean-Denis Courcol; Henry Markram; Felix Schürmann (Bioinform., 2020)

Metaball skinning of synthetic astroglial morphologies into realistic mesh models for in silico simulations and visual analytics. - Marwan Abdellah; Alessandro Foni; Eleftherios Zisis; Nadir Román Guerrero; Samuel Lapere; Jay S. Coggan; Daniel X. Keller; Henry Markram; Felix Schürmann (Bioinform., 2021)

Supervised Learning With Perceptual Similarity for Multimodal Gene Expression Registration of a Mouse Brain Atlas. - Jan Krepl; Francesco Casalegno; Emilie Delattre; Csaba Erö; Huanxiang Lu; Daniel X. Keller; Dimitri Rodarie; Henry Markram; Felix Schürmann (Frontiers Neuroinformatics, 2021)

Optimum trajectory learning in musculoskeletal systems with model predictive control and deep reinforcement learning. - Berat Denizdurduran; Henry Markram; Marc-Oliver Gewaltig (Biol. Cybern., 2022)

Correction: Optimum trajectory learning in musculoskeletal systems with model predictive control and deep reinforcement learning. - Berat Denizdurduran; Henry Markram; Marc-Oliver Gewaltig (Biol. Cybern., 2022)

A method to estimate the cellular composition of the mouse brain from heterogeneous datasets. - Dimitri Rodarie; Csaba Verasztó; Yann Roussel; Michael W. Reimann; Daniel X. Keller; Srikanth Ramaswamy; Henry Markram; Marc-Oliver Gewaltig (PLoS Comput. Biol., 2022)

Blue Brain Knowledge Graph: Leveraging Semantic Web Technologies for Simulation Neuroscience. - Cristina E. Gonzalez-Espinoza; Anna-Kristin Kaufmann; Eugenia Oshurko; Alejandra Garcia Rojas Martinez; Sarah Mouffok; Konstantinos Platis; Jonathan Lurie; Jayakrishnan Nair; Patrycja Lurie; Silvia Jimenez; Pierre-Alexandre Fonta; Huanxiang Lu; et al. (ISWC (Posters/Demos/Industry), 2023)

Blue Brain Nexus: An open, secure, scalable system for knowledge graph management and data-driven science. - Mohameth-François Sy; Bogdan Roman; Samuel Kerrien; Didac Montero Mendez; Henry Genet; Wojciech Wajerowicz; Michaël Dupont; Ian Lavriushev; Julien Machon; Kenneth Pirman; Dhanesh Neela Mana; Natalia Stafeeva; et al. (Semantic Web, 2023)

Ultraliser: a framework for creating multiscale, high-fidelity and geometrically realistic 3D models for in silico neuroscience. - Marwan Abdellah; Juan Jose Garcia-Cantero; Nadir Román Guerrero; Alessandro Foni; Jay S. Coggan; Corrado Calì; Marco Agus; Eleftherios Zisis; Daniel X. Keller; Markus Hadwiger; Pierre J. Magistretti; Henry Markram; et al. (Briefings Bioinform., 2023)

Mapping of morpho-electric features to molecular identity of cortical inhibitory neurons. - Yann Roussel; Csaba Verasztó; Dimitri Rodarie; Tanguy Damart; Michael W. Reimann; Srikanth Ramaswamy; Henry Markram; Daniel X. Keller (PLoS Comput. Biol., 2023)

A universal workflow for creation, validation, and generalization of detailed neuronal models. - Maria Reva; Christian Rössert; Alexis Arnaudon; Tanguy Damart; Darshan Mandge; Anil Tuncel; Srikanth Ramaswamy; Henry Markram; Werner Van Geit (Patterns, 2023)

BlueCelluLab: Biologically Detailed Neural Network Experimentation API. - Anil Tuncel; Werner Van Geit; Mike Gevaert; Benjamin Torben-Nielsen; Darshan Mandge; Ilkan Kiliç; Aurélien Jaquier; Eilif B. Müller; Lida Kanari; Henry Markram (J. Open Source Softw., 2024)

A Multimodal Fitting Approach to Construct Single-Neuron Models With Patch Clamp and High-Density Microelectrode Arrays. - Alessio Paolo Buccino; Tanguy Damart; Julian Bartram; Darshan Mandge; Xiaohan Xue; Mickael Zbili; Tobias Gänswein; Aurélien Jaquier; Vishalini Emmenegger; Henry Markram; Andreas Hierlemann; Werner Van Geit (Neural Comput., 2024)

Seizure and redox rescue in a model of glucose transport deficiency. - Jay S. Coggan; Polina Shichkova; Henry Markram; Daniel X. Keller (PLoS Comput. Biol., 2025)

Computational Generation of Long-range Axonal Morphologies. - Adrien Berchet; Rémy Petkantchin; Henry Markram; Lida Kanari (Neuroinformatics, 2025)