Functional Topology Classification of Biological Computing Networks. - Pablo Blinder; Itay Baruchi; Vladislav Volman; Herbert Levine; Danny Baranes; Eshel Jacob (Nat. Comput., 2005)

Swarming patterns in Microorganisms: Some new modeling results. - Herbert Levine; Eshel Ben-Jacob; Inon Cohen; Wouter-Jan Rappel (CDC, 2006)

The Astrocyte as a Gatekeeper of Synaptic Information Transfer. - Vladislav Volman; Eshel Ben-Jacob; Herbert Levine (Neural Comput., 2007)

Small Regulatory RNAs May Sharpen Spatial Expression Patterns. - Erel Levine; Peter T. McHale; Herbert Levine (PLoS Comput. Biol., 2007)

Astrocytes Optimize the Synaptic Transmission of Information. - Suhita Nadkarni; Peter Jung; Herbert Levine (PLoS Comput. Biol., 2008)

Modelling Vesicular Release at Hippocampal Synapses. - Suhita Nadkarni; Thomas M. Bartol; Terrence J. Sejnowski; Herbert Levine (PLoS Comput. Biol., 2010)

Shunting Inhibition Controls the Gain Modulation Mediated by Asynchronous Neurotransmitter Release in Early Development. - Vladislav Volman; Herbert Levine; Terrence J. Sejnowski (PLoS Comput. Biol., 2010)

Activated Membrane Patches Guide Chemotactic Cell Motility. - Inbal Hecht; Monica L. Skoge; Pascale G. Charest; Eshel Ben-Jacob; Richard A. Firtel; William F. Loomis; Herbert Levine; Wouter-Jan Rappel (PLoS Comput. Biol., 2011)

Collective Signal Processing in Cluster Chemotaxis: Roles of Adaptation, Amplification, and Co-attraction in Collective Guidance. - Brian A. Camley; Juliane Zimmermann; Herbert Levine; Wouter-Jan Rappel (PLoS Comput. Biol., 2016)

Interrogating the topological robustness of gene regulatory circuits by randomization. - Bin Huang; Mingyang Lu; Dongya Jia; Eshel Ben-Jacob; Herbert Levine; José N. Onuchic (PLoS Comput. Biol., 2017)

RACIPE: a computational tool for modeling gene regulatory circuits using randomization. - Bin Huang; Dongya Jia; Jingchen Feng; Herbert Levine; José N. Onuchic; Mingyang Lu (BMC Syst. Biol., 2018)

A mechanism for epithelial-mesenchymal heterogeneity in a population of cancer cells. - Shubham Tripathi; Priyanka Chakraborty; Herbert Levine; Mohit Kumar Jolly (PLoS Comput. Biol., 2020)

Gene Circuit Explorer (GeneEx): an interactive web-app for visualizing, simulating and analyzing gene regulatory circuits. - Vivek Kohar; Danya Gordin; Ataur Katebi; Herbert Levine; José N. Onuchic; Mingyang Lu (Bioinform., 2021)

Rapid assessment of T-cell receptor specificity of the immune repertoire. - Xingcheng Lin; Jason T. George; Nicholas P. Schafer; Kevin Ng Chau; Michael E. Birnbaum; Cecilia Clementi; José N. Onuchic; Herbert Levine (Nat. Comput. Sci., 2021)

Cluster size distribution of cells disseminating from a primary tumor. - Mrinmoy Mukherjee; Herbert Levine (PLoS Comput. Biol., 2021)

A mechanistic modeling framework reveals the key principles underlying tumor metabolism. - Shubham Tripathi; Jun Hyoung Park; Shivanand Pudakalakatti; Pratip K. Bhattacharya; Benny Abraham Kaipparettu; Herbert Levine (PLoS Comput. Biol., 2022)