Hesham Ali
Orcid: 0000-0002-8016-6144Affiliations:
- University of Nebraska Omaha, USA
According to our database1,
Hesham Ali
authored at least 182 papers
between 1992 and 2024.
Collaborative distances:
Collaborative distances:
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Online presence:
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on unomaha.edu
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on orcid.org
On csauthors.net:
Bibliography
2024
Geom-SAC: Geometric Multi-Discrete Soft Actor Critic With Applications in De Novo Drug Design.
IEEE Access, 2024
A Graph-Theoretic Approach for Examining Team Communities in Sports Transfer Markets.
Proceedings of the 57th Hawaii International Conference on System Sciences, 2024
2023
A New Graph-Based Reinforcement Learning Environment for Targeted Molecular Generation and Optimization✱.
Proceedings of the 2023 12th International Conference on Software and Information Engineering, 2023
A Correlation Network Model for Analyzing Mobility Data in Depression Related Studies.
Proceedings of the 16th International Joint Conference on Biomedical Engineering Systems and Technologies, 2023
A Network Analysis Approach for the Classification of Psychiatric Disorders Using Multi-Modal Data.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023
2022
Detection of Parkinson's Disease Using Wrist Accelerometer Data and Passive Monitoring.
Sensors, 2022
A New Approach for Analyzing Financial Markets using Correlation Networks and Population Analysis.
Proceedings of the 24th International Conference on Enterprise Information Systems, 2022
Analyzing Walking and Driving Behavior Across Different Age Groups Using Population Analysis and Correlation Networks.
Proceedings of the 5th International Conference on Communications, 2022
A Novel Population Analysis Approach for Analyzing Financial Markets under Crises - 2008 Economic crash and Covid-19 pandemic.
Proceedings of the 55th Hawaii International Conference on System Sciences, 2022
The Comparison of Various Correlation Network Models in Studying Mobility Data for the Analysis of Depression Episodes.
Proceedings of the 15th International Joint Conference on Biomedical Engineering Systems and Technologies, 2022
A Data-Driven Approach for the Analysis of Behavioral Disorders With a Focus on Classification and Severity Estimation.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022
Proceedings of the BCB '22: 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, Northbrook, Illinois, USA, August 7, 2022
2021
A Multiomics Graph Database System for Biological Data Integration and Cancer Informatics.
J. Comput. Biol., 2021
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021
2020
NEEP: null empirically estimated p-values for high-throughput molecular survival analysis.
J. Open Source Softw., 2020
Measurement of structural change in co-expression networks from cancer gene expression data.
Int. J. Data Min. Bioinform., 2020
Proceedings of the Bioinformatics and Biomedical Engineering, 2020
A Dynamic Approach for Managing Heterogeneous Wireless Networks in Smart Environments.
Proceedings of the IEEE Symposium on Computers and Communications, 2020
On the Planarity of Validated Complexes of Model Organisms in Protein-Protein Interaction Networks.
Proceedings of the Computational Science - ICCS 2020, 2020
Smart Computational Approaches with Advanced Feature Selection Algorithms for Optimizing the Classification of Mobility Data in Health Informatics.
Proceedings of the BCB '20: 11th ACM International Conference on Bioinformatics, 2020
Characterization of S. cerevisiae Protein Complexes by Representative DDI Graph Planarity.
Proceedings of the BCB '20: 11th ACM International Conference on Bioinformatics, 2020
2019
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019
Uncovering and characterizing splice variants associated with survival in lung cancer patients.
PLoS Comput. Biol., 2019
Identification of temporal network changes in short-course gene expression from C. elegans reveals structural volatility.
Int. J. Comput. Biol. Drug Des., 2019
On Identifying Candidates for Drug Repurposing for the Treatment of Ulcerative Colitis using Gene Expression Data.
Proceedings of the Bioinformatics and Biomedical Engineering, 2019
A New Graph Database System for Multi-omics Data Integration and Mining Complex Biological Information.
Proceedings of the Computational Advances in Bio and Medical Sciences, 2019
Machine Learning and Similarity Network Approaches to Support Automatic Classification of Parkinson's Diseases Using Accelerometer-based Gait Analysis.
Proceedings of the 52nd Hawaii International Conference on System Sciences, 2019
Identifying Structural Changes in Correlation Networks Models of Cancer Gene Expression by Stage.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019
2018
A Graph-Theoretic Approach for Identifying Bacterial Inter-correlations and Functional Pathways in Microbiome Data.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018
2017
Proceedings of the 15th ACM International Symposium on Mobility Management and Wireless Access, 2017
Parallel NGS Assembly Using Distributed Assembly Graphs Enriched with Biological Knowledge.
Proceedings of the 2017 IEEE International Parallel and Distributed Processing Symposium Workshops, 2017
A Correlation Network Model for Structural Health Monitoring and Analyzing Safety Issues in Civil Infrastructures.
Proceedings of the 50th Hawaii International Conference on System Sciences, 2017
Graph-based Analysis of Genetic Features Associated with Mobile Elements in Crohn s Disease and Healthy Gut Microbiomes.
Proceedings of the 10th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2017), 2017
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017
Evaluation of the oral microbiome as a biomarker for early detection of human oral carcinomas.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017
On the integration of assembly and non-assembly approaches for comparing biological sequences.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017
A network-based approach to mine temporal genes exhibiting significant expression variation in Caenorhabditis elegans.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017
Proceedings of the 8th ACM International Conference on Bioinformatics, 2017
Proceedings of the 23rd Americas Conference on Information Systems, 2017
2016
A dynamic run-profile energy-aware approach for scheduling computationally intensive bioinformatics applications.
Proceedings of the International Conference on High Performance Computing & Simulation, 2016
Proceedings of the International Conference on High Performance Computing & Simulation, 2016
Proceedings of the Biomedical Engineering Systems and Technologies, 2016
Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2016), 2016
2015
A Multi-stage Graph Approach for Efficient Clustering in Self-Organized Wireless Sensor Networks.
Proceedings of the SENSORNETS 2015, 2015
Applications of High Performance Computing in Bioinformatics, Computational Biology and Computational Chemistry.
Proceedings of the Bioinformatics and Biomedical Engineering, 2015
Identification of Biologically Significant Elements Using Correlation Networks in High Performance Computing Environments.
Proceedings of the Bioinformatics and Biomedical Engineering, 2015
Evaluating the Robustness of Correlation Network Analysis in the Aging Mouse Hypothalamus.
Proceedings of the Biomedical Engineering Systems and Technologies, 2015
Identifying Aging Genes in the Aging Mouse Hypothalamus Using Gateway Node Analysis of Correlation Networks.
Proceedings of the BIOINFORMATICS 2015, 2015
Next generation sequence assembler mis-assembly of phage genomes with terminal redundancy.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015
On the comparison of state- and transition-based analysis of biological relevance in gene co-expression networks.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015
2014
Int. J. Comput. Biol. Drug Des., 2014
BMC Syst. Biol., 2014
Proceedings of the IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, 2014
Proceedings of the 47th Hawaii International Conference on System Sciences, 2014
Proceedings of the BIOINFORMATICS 2014, 2014
On the impact of data integration and edge enrichment in mining significant signals from biological networks.
Proceedings of the 5th ACM Conference on Bioinformatics, 2014
Focus: a new multilayer graph model for short read analysis and extraction of biologically relevant features.
Proceedings of the 5th ACM Conference on Bioinformatics, 2014
2013
An efficient and scalable graph modeling approach for capturing information at different levels in next generation sequencing reads.
BMC Bioinform., 2013
A base composition analysis of natural patterns for the preprocessing of metagenome sequences.
BMC Bioinform., 2013
Exploring Database Keyword Search for Association Studies between Genetic Variants and Diseases.
Proceedings of the First International Conference on Information Technology and Quantitative Management, 2013
Proceedings of the International Conference on High Performance Computing & Simulation, 2013
Analysis of Incrementally Generated Clusters in Biological Networks Using Graph-Theoretic Filters and Ontology Enrichment.
Proceedings of the 13th IEEE International Conference on Data Mining Workshops, 2013
A Tolerance Graph Approach for Domain-Specific Assembly of Next Generation Sequencing Data.
Proceedings of the 13th IEEE International Conference on Data Mining Workshops, 2013
On Identifying and Analyzing Significant Nodes in Protein-Protein Interaction Networks.
Proceedings of the 13th IEEE International Conference on Data Mining Workshops, 2013
Proceedings of the 13th IEEE International Conference on Data Mining Workshops, 2013
Proceedings of the ACM Conference on Bioinformatics, 2013
2012
Proceedings of the International Conference on Computational Science, 2012
Proceedings of the International Conference on Computational Science, 2012
Functional identification in correlation networks using gene ontology edge annotation.
Int. J. Comput. Biol. Drug Des., 2012
The Development of Parallel Adaptive Sampling Algorithms for Analyzing Biological Networks.
Proceedings of the 26th IEEE International Parallel and Distributed Processing Symposium Workshops & PhD Forum, 2012
An energy-aware bioinformatics application for assembling short reads in high performance computing systems.
Proceedings of the 2012 International Conference on High Performance Computing & Simulation, 2012
HPCS 2012 tutorials: Tutorial I: High performance computing in biomedical informatics.
Proceedings of the 2012 International Conference on High Performance Computing & Simulation, 2012
Proceedings of the 41st International Conference on Parallel Processing, 2012
Proceedings of the 45th Hawaii International International Conference on Systems Science (HICSS-45 2012), 2012
Proceedings of the 45th Hawaii International International Conference on Systems Science (HICSS-45 2012), 2012
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012
On the design of advanced filters for biological networks using graph theoretic properties.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012
A meta-genome sequencing and assembly preprocessing algorithm inspired by restriction site base composition.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012
Enriching miRNA binding site specificity with sequence profile based filtering of 3'-UTR region of mRNA.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012
2011
Proceedings of the International Conference on Computational Science, 2011
An energy-aware genetic algorithm for managing self-organized wireless sensor networks.
Proceedings of the IFIP Wireless Days Conference 2011, 2011
A noise reducing sampling approach for uncovering critical properties in large scale biological networks.
Proceedings of the 2011 International Conference on High Performance Computing & Simulation, 2011
Proceedings of the 44th Hawaii International International Conference on Systems Science (HICSS-44 2011), 2011
Identifying modular function via edge annotation in gene correlation networks using Gene Ontology search.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011
A New Approach for Sequence Analysis: Illustrating an Expanded Bioinformatics View through Exploring Properties of the Prestin Protein.
Proceedings of the Handbook of Research on Computational and Systems Biology, 2011
2010
Classification and Identification of fungal Sequences Using Characteristic restriction endonuclease Cut Order.
J. Bioinform. Comput. Biol., 2010
A dynamic energy-aware model for scheduling computationally intensive bioinformatics applications.
Proceedings of the 2010 International Conference on High Performance Computing & Simulation, 2010
An intelligent data-centric approach toward identification of conserved motifs in protein sequences.
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010
2009
Improving Network Throughput Using a Fixed Scheduling Scheme and a P-Persistent Approach.
Proceedings of the NTMS 2009, 2009
Proceedings of the 6th Annual International Conference on Mobile and Ubiquitous Systems: Computing, 2009
Proceedings of the IEEE International Symposium on Technology and Society, 2009
A Computational Method to Predict DNA Copy Number Alterations from Gene Expression Data in Tumor Cases.
Proceedings of the 42st Hawaii International International Conference on Systems Science (HICSS-42 2009), 2009
Proceedings of the 42st Hawaii International International Conference on Systems Science (HICSS-42 2009), 2009
Proceedings of the 17th European Conference on Information Systems, 2009
2008
Message Passing Clustering (MPC): a knowledge-based framework for clustering under biological constraints.
Int. J. Data Min. Bioinform., 2008
A Hidden Markov Model approach to predicting yeast gene function from sequential gene expression data.
Int. J. Bioinform. Res. Appl., 2008
Self Ranking and Evaluation Approach for Focused Crawler Based on Multi-Agent System.
Int. Arab J. Inf. Technol., 2008
Proceedings of the Self-Organizing Systems, Third International Workshop, 2008
A Hidden Markov Model Approach for Prediction of Genomic Alterations from Gene Expression Profiling.
Proceedings of the Bioinformatics Research and Applications, 2008
Proceedings of the 22nd IEEE International Symposium on Parallel and Distributed Processing, 2008
Proceedings of the 41st Hawaii International International Conference on Systems Science (HICSS-41 2008), 2008
Proceedings of the 2008 International Conference on BioMedical Engineering and Informatics, 2008
Proceedings of the 2008 International Conference on BioMedical Engineering and Informatics, 2008
Proceedings of the Learning from the past & charting the future of the discipline. 14th Americas Conference on Information Systems, 2008
Proceedings of the Learning from the past & charting the future of the discipline. 14th Americas Conference on Information Systems, 2008
2007
Proceedings of the Third IEEE International Conference on Wireless and Mobile Computing, 2007
Dynamic energy aware task scheduling using run-queue peek.
Proceedings of the IASTED International Conference on Parallel and Distributed Computing and Networks, 2007
Applications and Performances of Extended TTDDs in Large-Scale Wireless Sensor Networks.
Proceedings of the Mobile Ad-Hoc and Sensor Networks, Third International Conference, 2007
A Robust Scalable Cluster-Based Multi-hop Routing Protocol for Wireless Sensor Networks.
Proceedings of the Parallel and Distributed Processing and Applications, 2007
Virtual CGH: Prediction of Novel Regions of Chromosomal Alterations in Tumor from Gene Expression Profiling.
Proceedings of the 40th Hawaii International International Conference on Systems Science (HICSS-40 2007), 2007
Proceedings of the 40th Hawaii International International Conference on Systems Science (HICSS-40 2007), 2007
Reducing Folding Scenario Candidates in Pseudoknots Detection Using PLMM_DPSS Algorithm Integrated With Energy Filters.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007
Proceedings of the Reaching New Heights. 13th Americas Conference on Information Systems, 2007
2006
A coarse-grain analysis for the performance of measurement-based admission control algorithms.
J. Comput. Methods Sci. Eng., 2006
J. Bioinform. Comput. Biol., 2006
Comput. Biol. Chem., 2006
Impact of Employing Different Security Levels on QoS Parameters in Virtual Private Networks.
Proceedings of the IASTED International Conference on Parallel and Distributed Computing and Networks, 2006
AdProc: An Adaptive Routing Framework to Provide QoS in Wireless Sensor Networks.
Proceedings of the IASTED International Conference on Parallel and Distributed Computing and Networks, 2006
On the Impact of Employing Various Network Architectures on the Performance of Collaborative Applications.
Proceedings of the IASTED International Conference on Internet and Multimedia Systems and Applications, 2006
Proceedings of the Emerging Directions in Embedded and Ubiquitous Computing, 2006
Proceedings of the 2nd International ICST Conference on Collaborative Computing: Networking, 2006
Proceedings of the Connecting the Americas. 12th Americas Conference on Information Systems, 2006
Ubiquitous Connectivity: A Framework for Business Models for Wireless Community Networks.
Proceedings of the Connecting the Americas. 12th Americas Conference on Information Systems, 2006
A Genetic Algorithm for Simplifying the Amino Acid Alphabet in Bioinformatics Applications.
Proceedings of the IASTED International Conference on Artificial Intelligence and Applications, 2006
2005
An evolutionary approach to vehicle routing problem with dynamic time and precedence relationships.
J. Comput. Methods Sci. Eng., 2005
BMC Bioinform., 2005
Proceedings of the 2005 ACM Symposium on Applied Computing (SAC), 2005
A Genetic Real-Time Fault-Tolerant Scheduling Algorithm with Backup Overloading Technique.
Proceedings of the International Conference on Parallel and Distributed Computing Systems, 2005
Fault Tolerant Scheduling of Interval Ordered Tasks with Communication in a Multiprocessor System.
Proceedings of the IASTED International Conference on Parallel and Distributed Computing and Networks, 2005
Proceedings of the 10th IEEE Symposium on Computers and Communications (ISCC 2005), 2005
A new clustering algorithm using message passing and its applications in analyzing microarray data.
Proceedings of the Fourth International Conference on Machine Learning and Applications, 2005
Proceedings of the Computational Science, 2005
Proceedings of the 38th Hawaii International Conference on System Sciences (HICSS-38 2005), 2005
Proceedings of the 38th Hawaii International Conference on System Sciences (HICSS-38 2005), 2005
Introduction to Mini-Track: Advanced Computational Approaches and IT Techniques in Bioinformatics.
Proceedings of the 38th Hawaii International Conference on System Sciences (HICSS-38 2005), 2005
Proceedings of the 38th Hawaii International Conference on System Sciences (HICSS-38 2005), 2005
A New Clustering Strategy with Stochastic Merging and Removing Based on Kernel Functions.
Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, 2005
Learning Yeast Gene Functions from Heterogeneous Sources of Data Using Hybrid Weighted Bayesian Networks.
Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference, 2005
Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, 2005
A hierarchical virtual-backbone routing approach in ad hoc networks.
Proceedings of the Third IASTED International Conference on Communications and Computer Networks, 2005
Predicting Yeast Gene Function Based on Hidden Markov Models.
Proceedings of the 20th International Conference on Computers and Their Applications, 2005
Proceedings of the Fifth IEEE International Symposium on Bioinformatic and Bioengineering (BIBE 2005), 2005
On Clustering Biological Data Using Unsupervised and Semi-Supervised Message Passing.
Proceedings of the Fifth IEEE International Symposium on Bioinformatic and Bioengineering (BIBE 2005), 2005
Proceedings of the A Conference on a Human Scale. 11th Americas Conference on Information Systems, 2005
A Dynamic Bayesian Network Model for Hierarchial Classification and its Application in Predicting Yeast Genes Functions.
Proceedings of the A Conference on a Human Scale. 11th Americas Conference on Information Systems, 2005
Proceedings of the A Conference on a Human Scale. 11th Americas Conference on Information Systems, 2005
2004
Proceedings of the 2004 International Symposium on Circuits and Systems, 2004
Proceedings of the 18th International Parallel and Distributed Processing Symposium (IPDPS 2004), 2004
Proceedings of the 37th Hawaii International Conference on System Sciences (HICSS-37 2004), 2004
Proceedings of the 37th Hawaii International Conference on System Sciences (HICSS-37 2004), 2004
Proceedings of the 37th Hawaii International Conference on System Sciences (HICSS-37 2004), 2004
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004
A Common Interval Searching Algorithm for Protein Sequence Comparison.
Proceedings of the 17th International Conference on Computer Applications in Industry and Engineering, 2004
Adaptive Data Forwarding Techniques for Energy Conservation in Wireless Sensor Networks.
Proceedings of the 17th International Conference on Computer Applications in Industry and Engineering, 2004
A New Fast Fault Tolerant Scheduling Approach in Distributed Systems.
Proceedings of the 17th International Conference on Computer Applications in Industry and Engineering, 2004
2003
Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003
Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003
Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003
Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003
Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003
2000
A genetic algorithm for channel routing in VLSI design.
Proceedings of the ISCA 15th International Conference Computers and Their Applications, 2000
1997
A New Approach for Task Scheduling in Distributed Systems.
Proceedings of the IASTED International Conference on Parallel and Distributed Systems, 1997
1996
Extended Abstract: An Augmentation-Based Algorithm for Task Scheduling in Parallel Systems.
Proceedings of the 29th Annual Hawaii International Conference on System Sciences (HICSS-29), 1996
1995
Parallel Algorithms Appl., 1995
J. Parallel Distributed Comput., 1995
An Optimal Algorithm for Scheduling Interval Ordered Tasks with Communication on N Processors.
J. Comput. Syst. Sci., 1995
1994
Parallel Process. Lett., 1994
Parallel Algorithms Appl., 1994
Task scheduling in parallel and distributed systems.
Prentice Hall series in innovative technology, Prentice Hall, ISBN: 978-0-13-099235-2, 1994
1993
Parallel Process. Lett., 1993
1992
Proceedings of the 1992 ACM/SIGAPP Symposium on Applied Computing: Technological Challenges of the 1990's, 1992