Efficient Data Access for Parallel BLAST. - Heshan Lin; Xiaosong Ma; Praveen Chandramohan; Al Geist; Nagiza F. Samatova (IPDPS, 2005)

Exploring I/O Strategies for Parallel Sequence-Search Tools with S3aSim. - Avery Ching; Wu-chun Feng; Heshan Lin; Xiaosong Ma; Alok N. Choudhary (HPDC, 2006)

Grid applications - Parallel genomic sequence-searching on an ad-hoc grid: experiences, lessons learned, and implications. - Mark K. Gardner; Wu-chun Feng; Jeremy S. Archuleta; Heshan Lin; Xiaosong Ma (SC, 2006)

Parallel genomic sequence-search on a massively parallel system. - Oystein Thorsen; Brian E. Smith; Carlos P. Sosa; Karl Jiang; Heshan Lin; Amanda E. Peters; Wu-chun Feng (Conf. Computing Frontiers, 2007)

Semantic-based distributed i/o with the paramedic framework. - Pavan Balaji; Wu-chun Feng; Heshan Lin (HPDC, 2008)

Semantics-based distributed I/O for mpiBLAST. - Pavan Balaji; Wu-chun Feng; Jeremy S. Archuleta; Heshan Lin; Rajkumar Kettimuthu; Rajeev Thakur; Xiaosong Ma (PPoPP, 2008)

Massively parallel genomic sequence search on the Blue Gene/P architecture. - Heshan Lin; Pavan Balaji; Ruth Poole; Carlos P. Sosa; Xiaosong Ma; Wu-chun Feng (SC, 2008)

Adaptive Request Scheduling for Parallel Scientific Web Services. - Heshan Lin; Xiaosong Ma; Jiangtian Li; Ting Yu 001; Nagiza F. Samatova (SSDBM, 2008)

Power and Performance Characterization of Computational Kernels on the GPU. - Yang Jiao; Heshan Lin; Pavan Balaji; Wu-chun Feng (GreenCom/CPSCom, 2010)

MOON: MapReduce On Opportunistic eNvironments. - Heshan Lin; Xiaosong Ma; Jeremy S. Archuleta; Wu-chun Feng; Mark K. Gardner; Zhe Zhang 005 (HPDC, 2010)

Enhancing MapReduce via Asynchronous Data Processing. - Marwa K. Elteir; Heshan Lin; Wu-chun Feng (ICPADS, 2010)

The Green500 List: Year two. - Wu-chun Feng; Heshan Lin (IPDPS Workshops, 2010)

Global-scale distributed I/O with ParaMEDIC. - Pavan Balaji; Wu-chun Feng; Heshan Lin; Jeremy S. Archuleta; Satoshi Matsuoka; Andrew S. Warren; João Carlos Setubal; Ewing L. Lusk; Rajeev Thakur; Ian T. Foster; Daniel S. Katz; Shantenu Jha; et al. (Concurr. Comput. Pract. Exp., 2010)

A first look at integrated GPUs for green high-performance computing. - Thomas Scogland; Heshan Lin; Wu-chun Feng (Comput. Sci. Res. Dev., 2010)

Performance Characterization and Optimization of Atomic Operations on AMD GPUs. - Marwa K. Elteir; Heshan Lin; Wu-chun Feng (CLUSTER, 2011)

StreamMR: An Optimized MapReduce Framework for AMD GPUs. - Marwa K. Elteir; Heshan Lin; Wu-chun Feng; Tom Scogland (ICPADS, 2011)

Optimizing Dynamic Programming on Graphics Processing Units via Adaptive Thread-Level Parallelism. - Chao-Chin Wu; Jenn-Yang Ke; Heshan Lin; Wu-chun Feng (ICPADS, 2011)

Accelerating Protein Sequence Search in a Heterogeneous Computing System. - Shucai Xiao; Heshan Lin; Wu-chun Feng (IPDPS, 2011)

Spectral Method Characterization on FPGA and GPU Accelerators. - Karl Pereira; Peter Athanas; Heshan Lin; Wu Feng 001 (ReConFig, 2011)

Poster: characterizing the impact of memory-access techniques on AMD fusion. - Kenneth S. Lee; Heshan Lin; Wu-chun Feng (SC Companion, 2011)

Evaluating Performance Optimizations of Large-scale Genomic Sequence Search Applications using SST/macro. - Tae-Hyuk Ahn; Damian Dechev; Heshan Lin; Helgi Adalsteinsson; Curtis L. Janssen (SIMULTECH, 2011)

Coordinating Computation and I/O in Massively Parallel Sequence Search. - Heshan Lin; Xiaosong Ma; Wu-chun Feng; Nagiza F. Samatova (IEEE Trans. Parallel Distributed Syst., 2011)

Homology to Sequence Alignment, From. - Wu-chun Feng; Heshan Lin (Encyclopedia of Parallel Computing, 2011)

Transparent Accelerator Migration in a Virtualized GPU Environment. - Shucai Xiao; Pavan Balaji; James Dinan; Qian Zhu; Rajeev Thakur; Susan Coghlan; Heshan Lin; Gaojin Wen; Jue Hong; Wu-chun Feng (CCGRID, 2012)

OpenCL and the 13 dwarfs: a work in progress. - Wu-chun Feng; Heshan Lin; Thomas Scogland; Jing Zhang 039 (ICPE, 2012)

Reliable MapReduce computing on opportunistic resources. - Heshan Lin; Xiaosong Ma; Wu-chun Feng (Clust. Comput., 2012)

RSVM: A Region-based Software Virtual Memory for GPU. - Feng Ji; Heshan Lin; Xiaosong Ma (PACT, 2013)

Optimizing Burrows-Wheeler Transform-Based Sequence Alignment on Multicore Architectures. - Jing Zhang 039; Heshan Lin; Pavan Balaji; Wu-chun Feng (CCGRID, 2013)

Massive distributed and parallel log analysis for organizational security. - Xiaokui Shu; John Smiy; Danfeng (Daphne) Yao; Heshan Lin (GLOBECOM Workshops, 2013)

Consolidating Applications for Energy Efficiency in Heterogeneous Computing Systems. - Jing Zhang 039; Hao Wang 002; Heshan Lin; Wu-chun Feng (HPCC/EUC, 2013)

Performance characterization of data-intensive kernels on AMD Fusion architectures. - Kenneth S. Lee; Heshan Lin; Wu-chun Feng (Comput. Sci. Res. Dev., 2013)

cuBLASTP: Fine-Grained Parallelization of Protein Sequence Search on a GPU. - Jing Zhang 039; Hao Wang 002; Heshan Lin; Wu-chun Feng (IPDPS, 2014)

Adjusting Thread Parallelism Dynamically to Accelerate Dynamic Programming with Irregular Workload Distribution on GPGPUs. - Chao-Chin Wu; Jenn-Yang Ke; Heshan Lin; Syun-Sheng Jhan (Int. J. Grid High Perform. Comput., 2014)

Sand dam dynamic monitoring in coastal areas based on time-series remote sensing images. - Heshan Lin; Jinyan Xu; Degang Jiang; Yikang Gao; Lianhuan Wei; Jianhui Liu (IGARSS, 2016)