Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases. - Ahmet Süreyya Rifaioglu; Heval Atas; Maria Jesus Martin; Rengül Çetin-Atalay; Volkan Atalay; Tunca Dogan (Briefings Bioinform., 2019)

Protein domain-based prediction of drug/compound-target interactions and experimental validation on LIM kinases. - Tunca Dogan; Ece Akhan Güzelcan; Marcus Baumann; Altay Koyas; Heval Atas; Ian R. Baxendale; Maria Jesus Martin; Rengül Çetin-Atalay (PLoS Comput. Biol., 2021)

Learning functional properties of proteins with language models. - Serbülent Ünsal; Heval Atas; Muammer Albayrak; Kemal Turhan; Aybar C. Acar; Tunca Dogan (Nat. Mach. Intell., 2022)