ALPHLARD-NT: Bayesian Method for Human Leukocyte Antigen Genotyping and Mutation Calling through Simultaneous Analysis of Normal and Tumor Whole-Genome Sequence Data. - Shuto Hayashi; Takuya Moriyama; Rui Yamaguchi; Shinichi Mizuno; Mitsuhiro Komura; Satoru Miyano; Hidewaki Nakagawa; Seiya Imoto (J. Comput. Biol., 2019)

Neoantimon: a multifunctional R package for identification of tumor-specific neoantigens. - Takanori Hasegawa; Shuto Hayashi; Eigo Shimizu; Shinichi Mizuno; Atsushi Niida; Rui Yamaguchi; Satoru Miyano; Hidewaki Nakagawa; Seiya Imoto (Bioinform., 2020)

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. - Esther Rheinbay; Morten Muhlig Nielsen; Federico Abascal; Jeremiah Wala; Ofer Shapira; Grace Tiao; Henrik Hornshøj; Julian M. Hess; Randi Istrup Juul; Ziao Lin; Lars Feuerbach; Radhakrishnan Sabarinathan; et al. (Nat., 2020)