Melina II: a web tool for comparisons among several predictive algorithms to find potential motifs from promoter regions. - Toshiyuki Okumura; Hiroki Makiguchi; Yuko Makita; Riu Yamashita; Kenta Nakai (Nucleic Acids Res., 2007)

M-path: a compass for navigating potential metabolic pathways. - Michihiro Araki; Robert Sidney Cox III; Hiroki Makiguchi; Teppei Ogawa; Takeshi Taniguchi; Kohei Miyaoku; Masahiko Nakatsui; Kiyotaka Y. Hara; Akihiko Kondo (Bioinform., 2015)