HOMSTRAD: adding sequence information to structure-based alignments of homologous protein families. - Paul I. W. de Bakker; Alex Bateman; David F. Burke; Ricardo Núñez Miguel; Kenji Mizuguchi; Jiye Shi; Hiroki Shirai; Tom L. Blundell (Bioinform., 2001)

The SWIB and the MDM2 domains are homologous and share a common fold. - Riccardo Bennett-Lovsey; Sarah E. Hart; Hiroki Shirai; Kenji Mizuguchi (Bioinform., 2002)

Device Technology for embedded DRAM utilizing stacked MIM(Metal-Insulator-Metal) Capacitor. - Yasushi Yamagata; Hiroki Shirai; Hirotoshi Sugimura; S. Arai; Tomoko Wake; Ken Inoue; Takashi Sakoh; Masato Sakao; Takaho Tanigawa (CICC, 2006)

Use of Amino Acid Composition to Predict Ligand-Binding Sites. - Shinji Soga; Hiroki Shirai; Masato Kobori; Noriaki Hirayama (J. Chem. Inf. Model., 2007)

Identification of the Druggable Concavity in Homology Models Using the PLB Index. - Shinji Soga; Hiroki Shirai; Masato Kobori; Noriaki Hirayama (J. Chem. Inf. Model., 2007)

Chemocavity: Specific Concavity in Protein Reserved for the Binding of Biologically Functional Small Molecules. - Shinji Soga; Hiroki Shirai; Masato Kobori; Noriaki Hirayama (J. Chem. Inf. Model., 2008)

Geomagnetic Surveys by the Geospatial Information Authority of Japan and the Contribution of the Kakioka Magnetic Observatory. - Satoshi Abe; Isao Ueda; Hiroki Shirai; Katsuhiro Goto; Yoritoshi Ebina (Data Sci. J., 2013)

Kotai Antibody Builder: automated high-resolution structural modeling of antibodies. - Kazuo Yamashita; Kazuyoshi Ikeda; Karlou Mar Amada; Shide Liang; Yuko Tsuchiya; Haruki Nakamura; Hiroki Shirai; Daron M. Standley (Bioinform., 2014)