Horn Clause Computation by Self-assembly of DNA Molecules. - Hiroki Uejima; Masami Hagiya; Satoshi Kobayashi (DNA, 2001)

Conformational Addressing Using the Hairpin Structure of Single-Strand DNA. - Atsushi Kameda; Masahito Yamamoto; Hiroki Uejima; Masami Hagiya; Kensaku Sakamoto; Azuma Ohuchi (DNA, 2003)

Secondary Structure Design of Multi-state DNA Machines Based on Sequential Structure Transitions. - Hiroki Uejima; Masami Hagiya (DNA, 2003)

Analyzing Secondary Structure Transition Paths of DNA/RNA Molecules. - Hiroki Uejima; Masami Hagiya (DNA, 2003)

Hairpin-based state machine and conformational addressing: Design and experiment. - Atsushi Kameda; Masahito Yamamoto; Hiroki Uejima; Masami Hagiya; Kensaku Sakamoto; Azuma Ohuchi (Nat. Comput., 2005)