AYUMS: an algorithm for completely automatic quantitation based on LC-MS/MS proteome data and its application to the analysis of signal transduction. - Ayumu Saito; Masao Nagasaki; Masaaki Oyama; Hiroko Kozuka-Hata; Kentaro Semba; Sumio Sugano; Tadashi Yamamoto; Satoru Miyano (BMC Bioinform., 2007)

Quantitative phosphoproteomics-based molecular network description for high-resolution kinase-substrate interactome analysis. - Yuta Narushima; Hiroko Kozuka-Hata; Kouhei Tsumoto; Jun-Ichiro Inoue; Masaaki Oyama (Bioinform., 2016)