Hydrogen bond donors and acceptors are generally depolarized in α-helices as revealed by a molecular tailoring approach. - Hiroko X. Kondo; Ayumi Kusaka; Colin K. Kitakawa; Jinta Onari; Shusuke Yamanaka; Haruki Nakamura; Yu Takano (J. Comput. Chem., 2019)

PyDISH: database and analysis tools for heme porphyrin distortion in heme proteins. - Hiroko X. Kondo; Yusuke Kanematsu; Gen Masumoto; Yu Takano (Database J. Biol. Databases Curation, 2020)

Global Analysis of Heme Proteins Elucidates the Correlation between Heme Distortion and the Heme-Binding Pocket. - Hiroko X. Kondo; Masanori Fujii; Takuma Tanioka; Yusuke Kanematsu; Takashi Yoshida; Yu Takano (J. Chem. Inf. Model., 2022)