Petascale molecular dynamics simulation using the fast multipole method on K computer. - Yousuke Ohno; Rio Yokota; Hiroshi Koyama; Gentaro Morimoto; Aki Hasegawa; Gen Masumoto; Noriaki Okimoto; Yoshinori Hirano; Huda Ibeid; Tetsu Narumi; Makoto Taiji (Comput. Phys. Commun., 2014)

Hardware acceleration of tensor-structured multilevel ewald summation method on MDGRAPE-4A, a special-purpose computer system for molecular dynamics simulations. - Gentaro Morimoto; Yohei M. Koyama; Hao Zhang; Teruhisa S. Komatsu; Yousuke Ohno; Keigo Nishida; Itta Ohmura; Hiroshi Koyama; Makoto Taiji (SC, 2021)

Effective mechanical potential of cell-cell interaction explains three-dimensional morphologies during early embryogenesis. - Hiroshi Koyama; Hisashi Okumura; Atsushi M. Ito; Kazuyuki Nakamura; Tetsuhisa Otani; Kagayaki Kato; Toshihiko Fujimori (PLoS Comput. Biol., 2023)