Alternating Simple Multihead Finite Automata. - Hiroshi Matsuno; Katsushi Inoue; Hiroshi Taniguchi; Itsuo Takanami (Theor. Comput. Sci., 1985)

A simple modification for the drastic improvement of MACA in large propagation delay situation. - Hiroshi Matsuno; Hideyuki Ishinaka; Ayaka Hamanaga (WCNC, 2000)

Performance Evaluation of Mobile Agent on Its Living Time and Target Existing Rates in Servers. - Misako Urakami; Tetsuya Shigeyasu; Hiroshi Matsuno (ICDCS Workshops, 2002)

A Relationship between Densities and Numbers of Hidden Stations of Packet Radio Network. - Tetsuya Shigeyasu; Hideyuki Ishinaka; Hiroshi Matsuno (ICOIN (1), 2002)

Towards Biopathway Modeling and Simulation. - Hiroshi Matsuno; Sachie Fujita; Atsushi Doi; Masao Nagasaki; Satoru Miyano (ICATPN, 2003)

Recreating Biopathway Databases towards Simulation. - Masao Nagasaki; Atsushi Doi; Hiroshi Matsuno; Satoru Miyano (CMSB, 2003)

Boundary Formation by Notch Signaling in Drosophila Multicellular Systems: Experimental Observations and Gene Network Modeling by Genomic Object Net. - Hiroshi Matsuno; Ryutaro Murakani; Rie Yamane; Naoyuki Yamasaki; Sachie Fujita; Haruka Yoshimori; Satoru Miyano (Pacific Symposium on Biocomputing, 2003)

Biopathways representation and simulation on hybrid functional Petri net. - Hiroshi Matsuno; Yukiko Tanaka; Hitoshi Aoshima; Atsushi Doi; Mika Matsui; Satoru Miyano (Silico Biol., 2003)

Integrating Biopathway Databases for Large-scale Modeling and Simulation. - Masao Nagasaki; Atsushi Doi; Hiroshi Matsuno; Satoru Miyano (APBC, 2004)

Two simple modifications for improving IEEE802.11 DCF throughput performance. - Tetsuya Shigeyasu; Tadayuki Hirakawa; Hiroshi Matsuno; Norihiko Morinaga (WCNC, 2004)

Constructing biological pathway models with hybrid functional Petri net. - Atsushi Doi; Sachie Fujita; Hiroshi Matsuno; Masao Nagasaki; Satoru Miyano (Silico Biol., 2004)

Simulated Cell Division Processes of the Xenopus Cell Cycle Pathway by Genomic Object Net. - Mika Matsui; Sachie Fujita; Shunichi Suzuki; Hiroshi Matsuno; Satoru Miyano (J. Integr. Bioinform., 2004)

A New Wireless Networking System for Rescue Activities in Disasters – System Overview and Evaluation of Wireless Node. - Makoto Kamegawa; Mai Kawamoto; Tetsuya Shigeyasu; Misako Urakami; Hiroshi Matsuno (AINA, 2005)

Effect of Retransmissions in Mobile Agent Communications under Unstable Network Conditions. - Masayuki Sato; Misako Urakami; Hiroshi Matsuno (MDM, 2006)

Machine Learning Prediction of Amino Acid Patterns in Protein N-myristoylation. - Ryo Okada; Manabu Sugii; Hiroshi Matsuno; Satoru Miyano (PRIB, 2006)

Petri Net Based Descriptions for Systematic Understanding of Biological Pathways. - Hiroshi Matsuno; Chen Li 007; Satoru Miyano (IEICE Trans. Fundam. Electron. Commun. Comput. Sci., 2006)

Simulation-Based Validation of the p53 Transcriptional Activity with Hybrid Functional Petri Net. - Atsushi Doi; Masao Nagasaki; Hiroshi Matsuno; Satoru Miyano (Silico Biol., 2006)

Structural Modeling and Analysis of Signaling Pathways Based on Petri Nets. - Chen Li 007; Shunichi Suzuki; Qi-Wei Ge; Mitsuru Nakata; Hiroshi Matsuno; Satoru Miyano (J. Bioinform. Comput. Biol., 2006)

A New Regulatory Interaction Suggested by Simulations for Circadian Genetic Control Mechanism in Mammals. - Hiroshi Matsuno; Shin-Ichi T. Inouye; Yasuki Okitsu; Yasushi Fujii; Satoru Miyano (J. Bioinform. Comput. Biol., 2006)

A New MAC Protocol for Avoiding Needless Transmission Deferment Induced by Missed RTS/CTS Handshake. - Daishi Inoue; Tetsuya Shigeyasu; Hiroshi Matsuno; Norihiko Morinaga (AINA Workshops, 2008)

Disaster Information Service System for Relief Activities Using Ad-Hoc Network A Network Construction Algorithm and Results of Field Experiments. - Kanae Sakamoto; Misako Urakami; Tetsuya Shigeyasu; Hiroshi Matsuno (AINA Workshops, 2008)

An Algorithm to Estimate Delay Times in Petri Net Models of Signaling Pathways with Experimental Data. - Kanji Hioka; Yoshimasa Miwa; Chen Li 007; Qi-Wei Ge; Hiroshi Matsuno; Satoru Miyano (BIONETICS, 2008)

Foundations of Systems Biology - Using Cell Illustrator® and Pathway Databases. - Masao Nagasaki; Ayumu Saito; Atsushi Doi; Hiroshi Matsuno; Satoru Miyano (Springer, 2009)

Wireless Distributed Network System for Relief Activities after Disasters. - Tetsuya Shigeyasu; Misako Urakami; Hiroshi Matsuno (AINA Workshops, 2009)

A Design of Reduced Data Representation for Information Sharing in the Disaster-Affected Area. - Misako Urakami; Keiji Fujii; Mitsuhiro Kota; Hiroshi Matsuno (AINA Workshops, 2009)

A Broadcasting Method for Suppressing Hidden Terminals Effect on IEEE802.11DCF. - Tetsuya Shigeyasu; Hiroshi Matsuno; Norihiko Morinaga (CCNC, 2009)

Computational Predictions for Functional Proteins Working after Cleaved in Apoptotic Pathway. - Chigusa Miyakawa; Manabu Sugii; Hiroshi Matsuno; Satoru Miyano (CISIS, 2009)

A New Method for Improving MAC Level Broadcast Receive Ratio Using 2-Phase RTS/CTS Handshakes Sequence. - Tetsuya Shigeyasu; Hiroshi Matsuno; Norihiko Morinaga (NBiS, 2009)

A Method for Syncronous Transmissions with Exposing Terminal on the Basis of Overheating RTS Header Information. - Tetsuya Shigeyasu; Hiyuu Shimizu; Hiroshi Matsuno; Norihiko Morinaga (NBiS, 2009)

A new MAC protocol for reducing effect of needless transmission deferment induced by missed RTS/CTS handshake. - Tetsuya Shigeyasu; Daishi Inoue; Hiroshi Matsuno; Norihiko Morinaga (Mob. Inf. Syst., 2009)

Construction of Wireless Network for Information Communication for a Disaster-Affected Island. - Misako Urakami; Yuya Okada; Yasuyuki Niwa; Hisaya Motogi; Hiroshi Matsuno (AINA Workshops, 2010)

Effect of Adaptive RTS/CTS ON/OFF Control Method for Mitigating Transmission Overhead of IEEE802.11DCF. - Tetsuya Shigeyasu; Hiroshi Matsuno (BWCCA, 2010)

Wireless Distributed Network System for Relief Activities after Disasters - A Field Experiment for Channel Setting and a System for Information Exchange among Shelters. - Misako Urakami; Satoshi Innami; Makoto Kamegawa; Tetsuya Shigeyasu; Hiroshi Matsuno (BWCCA, 2010)

Delay Time Determination for the Timed Petri Net Model of a Signaling Pathway Based on Its Structural Information. - Yoshimasa Miwa; Yuki Murakami; Qi-Wei Ge; Chen Li 007; Hiroshi Matsuno; Satoru Miyano (IEICE Trans. Fundam. Electron. Commun. Comput. Sci., 2010)

On Determining Firing Delay Time of Transitions for Petri Net Based Signaling Pathways by Introducing Stochastic Decision Rules. - Yoshimasa Miwa; Chen Li 007; Qi-Wei Ge; Hiroshi Matsuno; Satoru Miyano (Silico Biol., 2010)

Throughput Improvement of IEEE802.11DCF with Adaptive RTS/CTS Control on the Basis of Existence of Hidden Terminals. - Tetsuya Shigeyasu; Makoto Akimoto; Hiroshi Matsuno (CISIS, 2011)

A New Slot Assignment Method for Slotted CSMA Based on Maximum Clique Extraction. - Tetsuya Shigeyasu; Xiong Liu; Hiroshi Matsuno (INCoS, 2011)

Wireless distributed network system for relief activities after disasters - improvement of ANPI and ADES-Plus systems. - Misako Urakami; Satoshi Innami; Makoto Kamegawa; Tetsuya Shigeyasu; Hiroshi Matsuno (Int. J. Space Based Situated Comput., 2011)

New Adaptive RTS/CTS Control Method for Reduced Transmission Overhead on Networks with Hidden Terminals. - Tetsuya Shigeyasu; Makoto Akimoto; Hiroshi Matsuno (J. Interconnect. Networks, 2011)

Hybrid Petri net based modeling for biological pathway simulation. - Hiroshi Matsuno; Masao Nagasaki; Satoru Miyano (Nat. Comput., 2011)

Construction of IEEE802.11-based Wireless Network for Community Information Sharing in a Disaster-Affected Area. - Tetsuya Shigeyasu; Shota Katahira; Hitoshi Morioka; Hiroshi Matsuno (AINA Workshops, 2012)

Effects of Directional Receiving for MAC-Level Broadcasting on Wireless Ad Hoc Networks. - Tetsuya Shigeyasu; Hiroshi Matsuno (NBiS, 2012)

Roles of RORα on Transcriptional Expressions in the Mammalian Circadian Regulatory System. - Hiroshi Matsuno; Makoto Akashi (BSB, 2013)

Identification of key regulators in glycogen utilization in E. coli based on the simulations from a hybrid functional Petri net model. - Zhongyuan Tian; Adrien Fauré; Hirotada Mori; Hiroshi Matsuno (BMC Syst. Biol., 2013)

Incorporation of Cycles and Inhibitory Arcs into the Timed Petri Net Model of Signaling Pathway. - Yuki Murakami; Qi-Wei Ge; Hiroshi Matsuno (IEICE Trans. Fundam. Electron. Commun. Comput. Sci., 2013)

Intelligent mechanisms in E. coli in processing carbon sources. - Zhongyuan Tian; Hiroshi Matsuno (J. Robotics Netw. Artif. Life, 2014)

On Parameter Setting in Identifying the Same Languages Involved in Different Language Data. - Ren Wu; Hiroshi Matsuno (J. Robotics Netw. Artif. Life, 2014)

Dependent shrink for Petri net models of signaling pathways. - Atsushi Mizuta; Qi-Wei Ge; Hiroshi Matsuno (BioPPN@Petri Nets, 2015)

A Case Study of HFPN Simulation: Finding Essential Roles of Ror Gene in the Interaction of Feedback Loops in Mammalian Circadian Clock. - Natsumi Mitou; Hiroshi Matsuno; Satoru Miyano; Shin-Ichi T. Inouye (Modeling in Systems Biology, The Petri Net Approach, 2016)

Hybrid Functional Petri Net with Extension for Dynamic Pathway Modeling. - Ayumu Saito; Masao Nagasaki; Hiroshi Matsuno; Satoru Miyano (Modeling in Systems Biology, The Petri Net Approach, 2016)

Dependent Shrink of Transitions for Calculating Firing Frequencies in Signaling Pathway Petri Net Model. - Atsushi Mizuta; Qi-Wei Ge; Hiroshi Matsuno (Algorithms, 2017)

Modeling and analysis of the Delta-Notch dependent boundary formation in the Drosophila large intestine. - Fei Liu 006; Deshun Sun; Ryutaro Murakami; Hiroshi Matsuno (BMC Syst. Biol., 2017)

Pattern formation analysis by colored Petri nets with quantitative manipulation of a gene. - Fei Liu; Ena Yamamoto; Katsunobu Shirahama; Tsubasa Saitoh; Shuhei Aoyama; Yumiko Harada; Ryutaro Murakami; Hiroshi Matsuno (BIBM, 2019)

Editorial: Petri nets for cellular process modelling. - Hiroshi Matsuno; Fei Liu 006; Ming Chen 005 (Biosyst., 2022)

Analysis of Pattern Formation by Colored Petri Nets With Quantitative Regulation of Gene Expression Level. - Fei Liu 006; Ena Yamamoto; Katsunobu Shirahama; Tsubasa Saitoh; Shuhei Aoyama; Yumiko Harada; Ryutaro Murakami; Hiroshi Matsuno (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Editorial: Systems bioinformatics for medicine. - Yoshiyuki Asai; Masahiko Nakatsui; Hiroshi Matsuno (Biosyst., 2024)