GC/MS Based Metabolomics: Development of a Data Mining System for Metabolite Identification by using Soft Independent Modeling of Class Analogy (SIMCA). - Hiroshi Tsugawa; Yuki Tsujimot; Masanori Arita; Takeshi Bamba; Eiichiro Fukusaki (BMC Bioinform., 2011)

MRMPROBS suite for metabolomics using large-scale MRM assays. - Hiroshi Tsugawa; Mitsuhiro Kanazawa; Atsushi Ogiwara; Masanori Arita (Bioinform., 2014)

Comprehensive comparison of in silico MS/MS fragmentation tools of the CASMI contest: database boosting is needed to achieve 93% accuracy. - Ivana Blazenovic; Tobias Kind; Hrvoje Torbasinovic; Slobodan Obrenovic; Sajjan S. Mehta; Hiroshi Tsugawa; Tobias Wermuth; Nicolas Schauer; Martina Jahn; Rebekka Biedendieck; Dieter Jahn; Oliver Fiehn (J. Cheminformatics, 2017)

Critical Assessment of Small Molecule Identification 2016: automated methods. - Emma Schymanski; Christoph Ruttkies; Martin Krauss; Céline Brouard; Tobias Kind; Kai Dührkop; Felicity Allen; Arpana Vaniya; Dries Verdegem; Sebastian Böcker; Juho Rousu; Huibin Shen; et al. (J. Cheminformatics, 2017)

Comprehensive identification of sphingolipid species by in silico retention time and tandem mass spectral library. - Hiroshi Tsugawa; Kazutaka Ikeda; Wataru Tanaka; Yuya Senoo; Makoto Arita; Masanori Arita (J. Cheminformatics, 2017)