New implementation of and the modeling by the extended simulated annealing process to structures of T4 lysozyme mutants at the 86th residue. - Shigeru Endo; Junichi Higo; Kuniaki Nagayama; Hiroshi Wako (J. Comput. Chem., 1996)

Conformational analysis of nucleic acid molecules with flexible furanose rings in dihedral angle space. - Masaki Tomimoto; Nobuhiro Go; Hiroshi Wako (J. Comput. Chem., 1996)

ProMode: a database of normal mode analyses on protein molecules with a full-atom model. - Hiroshi Wako; Masaki Kato; Shigeru Endo (Bioinform., 2004)

Normal mode analysis based on an elastic network model for biomolecules in the Protein Data Bank, which uses dihedral angles as independent variables. - Hiroshi Wako; Shigeru Endo (Comput. Biol. Chem., 2013)