MBGD update 2013: the microbial genome database for exploring the diversity of microbial world. - Ikuo Uchiyama; Motohiro Mihara; Hiroyo Nishide; Hirokazu Chiba (Nucleic Acids Res., 2013)

MBGD update 2015: microbial genome database for flexible ortholog analysis utilizing a diverse set of genomic data. - Ikuo Uchiyama; Motohiro Mihara; Hiroyo Nishide; Hirokazu Chiba (Nucleic Acids Res., 2015)

BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. - Toshiaki Katayama; Shuichi Kawashima; Gos Micklem; Shin Kawano; Jin-Dong Kim; Simon Kocbek; Shinobu Okamoto; Yue Wang 040; Hongyan Wu; Atsuko Yamaguchi; Yasunori Yamamoto; Erick Antezana; et al. (F1000Research, 2019)

MBGD update 2018: microbial genome database based on hierarchical orthology relations covering closely related and distantly related comparisons. - Ikuo Uchiyama; Motohiro Mihara; Hiroyo Nishide; Hirokazu Chiba; Masaki Kato (Nucleic Acids Res., 2019)

BioHackathon 2015: Semantics of data for life sciences and reproducible research. - Rutger A. Vos; Toshiaki Katayama; Hiroyuki Mishima; Shin Kawano; Shuichi Kawashima; Jin-Dong Kim; Yuki Moriya; Toshiaki Tokimatsu; Atsuko Yamaguchi; Yasunori Yamamoto; Hongyan Wu; Peter Amstutz; et al. (F1000Research, 2020)