Visualization for Genome Function Analysis. - Makoto Kano; Kunihiro Nishimura; Koichi Hirota; Michitaka Hirose; Hiroyuki Aburatani; Takao Hamakubo; Tatsuhiko Kodama (VR, 2001)

Visualization for Genome Function Analysis Using Immersive Projection Technology. - Makoto Kano; Shuichi Tsutsumi; Kunihiro Nishimura; Hiroyuki Aburatani; Koichi Hirota; Michitaka Hirose (VR, 2002)

Cluster Overlap Distribution Map: Visualization for Gene Expression Analysis Using Immersive Projection Technology. - Makoto Kano; Kunihiro Nishimura; Shuichi Tsutsumi; Hiroyuki Aburatani; Koichi Hirota; Michitaka Hirose (Presence Teleoperators Virtual Environ., 2003)

Virtual Environment Design Guidelines for Gene Expression Analysis: The Utility of a Lab Bench Metaphor and a Road Metaphor. - Kunihiro Nishimura; Koji Abe; Shuichi Tsutsumi; Hiroyuki Aburatani; Koichi Hirota; Michitaka Hirose (VR, 2004)

Multidimensional support vector machines for visualization of gene expression data. - Daisuke Komura; Hiroshi Nakamura; Shuichi Tsutsumi; Hiroyuki Aburatani; Sigeo Ihara (Bioinform., 2005)

CARAT: A novel method for allelic detection of DNA copy number changes using high density oligonucleotide arrays. - Jing Huang 024; Wen Wei; Joyce Chen; Jane Zhang; Guoying Liu; Xiaojun Di; Rui Mei; Shumpei Ishikawa; Hiroyuki Aburatani; Keith W. Jones; Michael H. Shapero (BMC Bioinform., 2006)

Noise Reduction from Genotyping Microarrays Using Probe Level Information. - Daisuke Komura; Kunihiro Nishimura; Shumpei Ishikawa; Binaya Panda; Jing Huang 024; Hiroshi Nakamura; Sigeo Ihara; Michitaka Hirose; Keith W. Jones; Hiroyuki Aburatani (Silico Biol., 2006)

Integrative bioinformatics analysis of transcriptional regulatory programs in breast cancer cells. - Atsushi Niida; Andrew D. Smith; Seiya Imoto; Shuichi Tsutsumi; Hiroyuki Aburatani; Michael Q. Zhang; Tetsu Akiyama (BMC Bioinform., 2008)

Genome-wide maps of mono- and di-nucleosomes of Aspergillus fumigatus. - Hiromi Nishida; Takayuki Motoyama; Shogo Yamamoto; Hiroyuki Aburatani; Hiroyuki Osada (Bioinform., 2009)

Gene set-based module discovery in the breast cancer transcriptome. - Atsushi Niida; Andrew D. Smith; Seiya Imoto; Hiroyuki Aburatani; Michael Q. Zhang; Tetsu Akiyama (BMC Bioinform., 2009)

A simple knowledge-based mining method for exploring hidden key molecules in a human biomolecular network. - Shingo Tsuji; Sigeo Ihara; Hiroyuki Aburatani (BMC Syst. Biol., 2012)

CellTree: an R/bioconductor package to infer the hierarchical structure of cell populations from single-cell RNA-seq data. - David A. duVerle; Sohiya Yotsukura; Seitaro Nomura; Hiroyuki Aburatani; Koji Tsuda (BMC Bioinform., 2016)

m6ATM: a deep learning framework for demystifying the m6A epitranscriptome with Nanopore long-read RNA-seq data. - Boyi Yu; Genta Nagae; Yutaka Midorikawa; Kenji Tatsuno; Bhaskar Dasgupta; Hiroyuki Aburatani; Hiroki Ueda (Briefings Bioinform., 2024)