Application of the Linux cluster for exhaustive window haplotype analysis using the FBAT and Unphased programs. - Hiroyuki Mishima; Andrew C. Lidral; Jun Ni (BMC Bioinform., 2008)

Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics. - Raoul Jean Pierre Bonnal; Jan Aerts; George Githinji; Naohisa Goto; Daniel MacLean; Chase A. Miller; Hiroyuki Mishima; Massimiliano Pagani; Ricardo Ramirez-Gonzalez; Geert Smant; Francesco Strozzi; Rob Syme; et al. (Bioinform., 2012)

The Ruby UCSC API: accessing the UCSC genome database using Ruby. - Hiroyuki Mishima; Jan Aerts; Toshiaki Katayama; Raoul Jean Pierre Bonnal; Koh-ichiro Yoshiura (BMC Bioinform., 2012)

BioHackathon 2015: Semantics of data for life sciences and reproducible research. - Rutger A. Vos; Toshiaki Katayama; Hiroyuki Mishima; Shin Kawano; Shuichi Kawashima; Jin-Dong Kim; Yuki Moriya; Toshiaki Tokimatsu; Atsuko Yamaguchi; Yasunori Yamamoto; Hongyan Wu; Peter Amstutz; et al. (F1000Research, 2020)