Interaction site prediction by structural similarity to neighboring clusters in protein-protein interaction networks. - Hiroyuki Monji; Satoshi Koizumi; Tomonobu Ozaki; Takenao Ohkawa (BMC Bioinform., 2011)

Binding site extraction by similar subgraphs mining from protein molecular surfaces. - Natsumi Kurumatani; Hiroyuki Monji; Takenao Ohkawa (BIBE, 2012)

Binding Site Extraction by Similar Subgraphs Mining from Protein Molecular Surfaces and Its Application to Protein Classification. - Natsumi Kurumatani; Hiroyuki Monji; Takenao Ohkawa (Int. J. Artif. Intell. Tools, 2014)