GPU accelerated adaptive banded event alignment for rapid comparative nanopore signal analysis. - Hasindu Gamaarachchi; Wai Chun Lam; Gihan Jayatilaka; Hiruna Samarakoon; Jared T. Simpson; Martin A. Smith; Sri Parameswaran (BMC Bioinform., 2020)

Accelerating Chaining in Genomic Analysis Using RISC- V Custom Instructions. - Kisaru Liyanage; Hasindu Gamaarachchi; Hassaan Saadat; Tuo Li 001; Hiruna Samarakoon; Sri Parameswaran (DATE, 2024)