Automated detection and tracking of many cells by using 4D live-cell imaging data. - Terumasa Tokunaga; Osamu Hirose; Shotaro Kawaguchi; Yu Toyoshima; Takayuki Teramoto; Hisaki Ikebata; Sayuri Kuge; Takeshi Ishihara; Yuichi Iino; Ryo Yoshida (Bioinform., 2014)

Repulsive parallel MCMC algorithm for discovering diverse motifs from large sequence sets. - Hisaki Ikebata; Ryo Yoshida (Bioinform., 2015)

Bayesian molecular design with a chemical language model. - Hisaki Ikebata; Kenta Hongo; Tetsu Isomura; Ryo Maezono; Ryo Yoshida (J. Comput. Aided Mol. Des., 2017)

Machine learning-driven generation and screening of potential ionic liquids for cellulose dissolution. - Mengyang Qu; Gyanendra Sharma; Naoki Wada; Hisaki Ikebata; Shigeyuki Matsunami; Kenji Takahashi (J. Cheminformatics, 2025)