BAIUCAS: a novel BLAST-based algorithm for the identification of upstream open reading frames with conserved amino acid sequences and its application to the Arabidopsis thaliana genome. - Hiro Takahashi; Anna Takahashi; Satoshi Naito; Hitoshi Onouchi (Bioinform., 2012)

A U-system approach for predicting metabolic behaviors and responses based on an alleged metabolic reaction network. - Kansuporn Sriyudthsak; Yuji Sawada; Yukako Chiba; Yui Yamashita; Shigehiko Kanaya; Hitoshi Onouchi; Toru Fujiwara; Satoshi Naito; Eberhard O. Voit; Fumihide Shiraishi; Masami Y. Hirai (BMC Syst. Biol., 2014)