MegaR: an interactive R package for rapid sample classification and phenotype prediction using metagenome profiles and machine learning. - Eliza Dhungel; Yassin Mreyoud; Ho-Jin Gwak; Ahmad Rajeh; Mina Rho; Tae-Hyuk Ahn (BMC Bioinform., 2021)

Transformer-based embedding applied to classify bacterial species using sequencing reads. - Ho-Jin Gwak; Mina Rho (BigComp, 2022)

ViBE: a hierarchical BERT model to identify eukaryotic viruses using metagenome sequencing data. - Ho-Jin Gwak; Mina Rho (Briefings Bioinform., 2022)