A physical model for tiling array analysis. - Ho-Ryun Chung; Dennis Kostka; Martin Vingron (ISMB/ECCB (Supplement of Bioinformatics), 2007)

Comparison of sequence-dependent tiling array normalization approaches. - Ho-Ryun Chung; Martin Vingron (BMC Bioinform., 2009)

Breakpointer: using local mapping artifacts to support sequence breakpoint discovery from single-end reads. - Ruping Sun; Michael I. Love; Tomasz Zemojtel; Anne-Katrin Emde; Ho-Ryun Chung; Martin Vingron; Stefan A. Haas (Bioinform., 2012)

Inferring nucleosome positions with their histone mark annotation from ChIP data. - Alessandro Mammana; Martin Vingron; Ho-Ryun Chung (Bioinform., 2013)

Finding Associations among Histone Modifications Using Sparse Partial Correlation Networks. - Julia Lasserre; Ho-Ryun Chung; Martin Vingron (PLoS Comput. Biol., 2013)

coTRaCTE predicts co-occurring transcription factors within cell-type specific enhancers. - Alena van Bömmel; Michael I. Love; Ho-Ryun Chung; Martin Vingron (PLoS Comput. Biol., 2018)

Demographic Parity: Mitigating Biases in Real-World Data. - Orestis Loukas; Ho-Ryun Chung (CoRR, 2023)

A totally empirical basis of science. - Orestis Loukas; Ho-Ryun Chung (CoRR, 2024)